Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01825 ATGCATAGTAAGAGAAGAAAGCAAAAGCTTCGCCAAGATGCACCTAAAGGTCCTACAAGTCAACCGGTGATTGACGAGGATGATGACGATGATGAAGTGTTGTTTGCTTTAAACTTGGAGGAGATGCGAAAGGATGTTGAATGCCCAATCTGTCTTGGGATCATTCGAAATACAAGGGTTGTTATGGAGTGCTTGCATCGCTTTTGCAAGGAGTGCATAGAGAAATCCTTTCGCCTTGGTAACAATGAATGTCCTGCTTGTCGTACGCATTGTTCAAGCCGACGATCACTAAGGGAAGACACCGAATTTGATGAGATAATTAATCTCCTTTTTCCAAACATTGATGAATACGAGGAAAAGGAAATGGCTTTTTCGGATGATGCAAAGAATAATATAAAGTCAATGCAAGAAGCGTATGGCAAGACTCTTGAACGACAAAGTGATGCACTGGGAAAGAAGGCTGCTGCTGCAACAACTAGGTCAAGAGATAGATACTCAAGGAGTGCAAATCAACCGTTGAGAAGAAGTTCAAGAAATGCAACTGCATTTTCCGAATCTAGTTCTAGCAGGGACATGACATTGCCTCCTGTTGCTGAAGAGAGAGAGACACAAGTCATAGCCGACAGTGACATAAATGAGTTTGTGATAGATGGACAAAGTTCTCAACATGAGACTAATGCAAGCTTAGTTGCAGGTATAACATTGCAATTGCAAGATCTCATTAGCTCATCTGATAAACTTGTATGGGGGCGGTTTGGCCTGAGGAGTCACACCAATGCTAGGCATGCTGCTTCTTCGAGGAGCAATCGCTTGGGGAGATTCATTGATCATCTGCAAAACTCCAATCAAAATGATGATGAGTTGGACATCTGTGTCAAACTTGTCTCTTTTGAGGAGGAAAGAGTGCCCAATTTGGCAAGGCCATACCTTAACTGCAGGCCTACATTGTTAATCAACCAACTGTGCCAGTATGTTGCCAGTGAAACCTTGCTGCAAACTGAAGAAATTGAATTGTACGTGGTGAAGGAGTGTGAGCCCGAGTTTGTAAGTGGTGAGGGAAAGCTTGATCCAGACAAATATGAGACTCAATTTCTTGAGAGAGGGGATCAAACTTTGGCTGAACTCAAAACAAACAATCTCAGCTTTGGCCATCTGGTCATAGCTTATAAGAGGAAGAAGTGGAACTTAAATGAAGTGTTGTCCTGCGCTGGTTCTGAATGA 1221 0.4275 MHSKRRKQKLRQDAPKGPTSQPVIDEDDDDDEVLFALNLEEMRKDVECPICLGIIRNTRVVMECLHRFCKECIEKSFRLGNNECPACRTHCSSRRSLREDTEFDEIINLLFPNIDEYEEKEMAFSDDAKNNIKSMQEAYGKTLERQSDALGKKAAAATTRSRDRYSRSANQPLRRSSRNATAFSESSSSRDMTLPPVAEERETQVIADSDINEFVIDGQSSQHETNASLVAGITLQLQDLISSSDKLVWGRFGLRSHTNARHAASSRSNRLGRFIDHLQNSNQNDDELDICVKLVSFEEERVPNLARPYLNCRPTLLINQLCQYVASETLLQTEEIELYVVKECEPEFVSGEGKLDPDKYETQFLERGDQTLAELKTNNLSFGHLVIAYKRKKWNLNEVLSCAGSE* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01825 406 Pfam Zinc finger, C3HC4 type (RING finger) 47 87 - -
Phac8g01825 406 ProSiteProfiles Zinc finger RING-type profile. 48 88 IPR001841 -
Phac8g01825 406 PANTHER OS11G0578200 PROTEIN 25 394 IPR044592 -
Phac8g01825 406 CDD RING-HC_RING1-like 45 110 - -
Phac8g01825 406 SMART ring_2 48 87 IPR001841 -
Phac8g01825 406 MobiDBLite consensus disorder prediction 150 197 - -
Phac8g01825 406 MobiDBLite consensus disorder prediction 1 27 - -
Phac8g01825 406 SUPERFAMILY RING/U-box 39 119 - -
Phac8g01825 406 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Phac8g01825 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 117 IPR013083 -
Phac8g01825 406 MobiDBLite consensus disorder prediction 161 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01825 Phac-Chr8 17300535 17324741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01825 39 102 RAD5 or RAD16-like Gene Family AT5G22750 38.806 2.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01825 K10695 - gmx:102666848 488.804