Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01821 ATGGAAGGTCGCCGGAGGGTAACACTACATGAAGAAATGTCAGCTTCCGACAGCAGCCGAGCCCGAGTGCTAACCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTGGACGCCGCCCAGGGAACCACCGTCCAAGAACCGAACCCTACTTGACATCATCAGAGAAGACGAGACCAACAAAAAGGATCGCAGATCCTGGAAAGCTTTCAAGGACAAGCTTCGGTTAAAGCGCGCAGGGTCTGCTTGGATATCGACGATTCATATTCCTACTTCGGATGTTCCTATCCCTAACCCGAATAGCAGAATCTTTACTCAGTTTGGTCGCCGAAACTCGGTCCGATTCTCCACTCTGACTACAGGTCCAACTGATTCCCAGACTCAGACTCAGGCTCCGACTCCGACTCCCTCCGACTCGGACATGTCATCTAACTACATGGCTCACCAGGTCGAGGACCTCAACCCTGCCACCGAAGAATCCGGTTCTCCGGTCGCCGCAGCTCCGGCAATCCGTCCTACGTTCAGTCGTCGCGGATCCACCCGCTTCGGCGGCGACTGCGCCGAGAACAACACAGCCGGAACCCTGCGGCCGCAGCTCTCGATTCGGAACTCGGCCAACCTGCAGTCGGAGCCGTACCGGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGATGAGGATGCGGACGAGGAGGGAGAGAAGCCGGGGGAGGGCAGGGCTCTGTCAGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGTCGGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAGCAGGCACCGGTGATGATGTCACTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGATGAGGATTTTGATGATGAAGCAGATGAAGAAGATGATGGAGATGGAGTGGGTTCCATGGAGCACACTTGCTGTGTTTGTATGGTGAGGCATAAGACTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGGGGAAACTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAGATTTTTTAA 1119 0.5559 MEGRRRVTLHEEMSASDSSRARVLTGLTLDDVLANQKRPSWTPPREPPSKNRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQFGRRNSVRFSTLTTGPTDSQTQTQAPTPTPSDSDMSSNYMAHQVEDLNPATEESGSPVAAAPAIRPTFSRRGSTRFGGDCAENNTAGTLRPQLSIRNSANLQSEPYRRGRVVTFRDSFDDEDADEEGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDDEADEEDDGDGVGSMEHTCCVCMVRHKTAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILEIF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01821 372 CDD RING-HC 323 361 - -
Phac8g01821 372 MobiDBLite consensus disorder prediction 1 20 - -
Phac8g01821 372 MobiDBLite consensus disorder prediction 1 17 - -
Phac8g01821 372 SMART ring_2 324 361 IPR001841 -
Phac8g01821 372 Coils Coil 248 271 - -
Phac8g01821 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 372 IPR013083 -
Phac8g01821 372 MobiDBLite consensus disorder prediction 178 249 - -
Phac8g01821 372 PANTHER OS01G0917900 PROTEIN 21 372 - -
Phac8g01821 372 MobiDBLite consensus disorder prediction 119 147 - -
Phac8g01821 372 Pfam Zinc finger, C3HC4 type (RING finger) 321 365 - -
Phac8g01821 372 MobiDBLite consensus disorder prediction 188 214 - -
Phac8g01821 372 SUPERFAMILY RING/U-box 323 368 - -
Phac8g01821 372 ProSiteProfiles Zinc finger RING-type profile. 324 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01821 Phac-Chr8 17160591 17163077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01821 19 372 C3H Transcription Factor Family AT3G07120 33.417 2.57e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01821 - - var:108328735 575.474