Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01782 ATGGTTTCAGGTTCAGGGATCTGCGCCAAGAGGGTGGTTGTGGACGCGCGCCACCACATGCTGGGAAGACTGGCCTCGATCGTGGCCAAGGAGCTTCTCAATGGGCAAAAGGTGGTGGTGGTCAGGTGCGAGGAGATTTGCATCTCCGGGGGACTCGTGAGACAGAAGATGAAGTACATGCGTTTCCTCCGCAAGCGCATGAACACCAAACCCTCTCATGGCCCCATTCACTTCCGGGCTCCCGGCAAGATCTTCTGGCGCACCGTTCGTGGGATGATTCCTCACAAGACAAAGCGTGGGGAAGCTGCTCTTGATCGATTGAAGGTGTATGAGGGTATTCCTCCTCCATACGACAAGACTAAGAGGATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAGGGACACAAATACTGTCTTCTAGGCAAATTGTCATCTGAGGTTGGATGGAACTATTATGATACCATCAGGGAACTGGAAAAGAAGAGGAAGGATAGAGCACTATTGTGTTATGAGAGGAAGAAGCAGCTTGCCAAATTAAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGAAGCTTGGTTCCCAAATTGAAATCCTTGCTCCTGTTAAGTACTGA 621 0.5072 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPGKIFWRTVRGMIPHKTKRGEAALDRLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLLGKLSSEVGWNYYDTIRELEKKRKDRALLCYERKKQLAKLRVKAEKVAEEKLGSQIEILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01782 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 Gene3D - 156 206 - -
Phac8g01782 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Phac8g01782 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Phac8g01782 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 PANTHER RIBOSOMAL PROTEIN L13 1 188 IPR005822 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Phac8g01782 206 FunFam 60S ribosomal protein L13a 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01782 Phac-Chr8 16525612 16527265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01782 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.350 1.21e-136 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01782 K02872 - gmx:100784830 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g01782 8 16525612 16527265 Phac8g01782 8 16525612 16527265 ECH