Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01769 ATGGCAAAATATATACCTAAAACAGGTTTGCGTAAAAATGTACATATTGGTTTGCGGAATCATAAGCTTAAAATACCAAAAGGAATTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTAACTATTACAGATGTACGTGGTCAAGTGGGTACACGAAGGGGAACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAATCATGATAAAAGGGCCTGGTCTCGGAAGAGATGCAACATTAAGAGCTATTCGTATAAGTGATATACTCTTAAATTTTATACGAGATGTAACTCCTATGCCATATAATGGATGTAGGTCTCCTAAAAAAAGACGTATTACTATGGTTCAAGAGAAATTAAGAGTCTCTACTTGGACACTACAATGGAAATGTGTTGAATCAAGAATAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTTCCCACTTATGAAAGGTCAAACCGATACAATAGGCATTGCAATCCGAAGAATTTTACTCGAAGAAATAGAGGGAACATGTATCACATGTGTAAAATCAGAGAAAATACCATATGAATATTCTACCATAATAGGTATTGAAGAATCAGTACATGAAATTTTCATGATTTTGAAAGAAATTGTATTGAAAAGTAATATGTATGGAATACAAGACGCATCGATTTCTTTCAAAGGTCTTGGATATATAACCGCTCAGGACATCATTTTACCACCCTTGGTGGAAATCGTTGATAATAGACAACATATAGCCAGCGTAACAGAACCTATTCATTTGTGTATTGAATTAAAAATTGAGAGGAATCGGGGGTATCGTATAAAAACACTAAAAAACTTTCAAGACGAAAGTTATGATATAGATGCTAGATTCATGCCTGTTCGAAATGTAAATTATAGTATTCATTCTTATGTCAATGAGAATGAAAAACAAGAGATACTTTTTCTCGAGATATGGACAAATGGAAGTTTAACTCCTAAGGAAGCCCTTTATGAAGCCTCCCAAAATTTGATTGAGTTATTTATTCCCTTTTTACATGCAAAAGAAGATAACTTGAATTTAGAAAAAAATCAACACAAAGATAAACTAAGGAAAAATAAAAAAGAAATAGCATTGAAATCTATTTTTATTGACCAATTAGAATTACCTCCTAGGATCTATAATTGTCTCAAAAGATCCAATATTCACACATTATTAGAACTTTTGAGTAACAGTCAAGAAGACCTTCTTAAATTGGAACATTTTCACGTAGAAGATGGAAAATCTATATTGGACGTTTTAAAAATACAAAAGTATTTTGCATGA 1341 0.3281 MAKYIPKTGLRKNVHIGLRNHKLKIPKGIIHVQASFNNTIVTITDVRGQVGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDATLRAIRISDILLNFIRDVTPMPYNGCRSPKKRRITMVQEKLRVSTWTLQWKCVESRIDSKRLYYGRFILFPLMKGQTDTIGIAIRRILLEEIEGTCITCVKSEKIPYEYSTIIGIEESVHEIFMILKEIVLKSNMYGIQDASISFKGLGYITAQDIILPPLVEIVDNRQHIASVTEPIHLCIELKIERNRGYRIKTLKNFQDESYDIDARFMPVRNVNYSIHSYVNENEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAKEDNLNLEKNQHKDKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLSNSQEDLLKLEHFHVEDGKSILDVLKIQKYFA* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01769 446 Hamap 30S ribosomal protein S11 [rpsK]. 7 126 IPR001971 GO:0003735|GO:0005840|GO:0006412
Phac8g01769 446 Gene3D - 186 303 IPR036643 -
Phac8g01769 446 NCBIfam DNA-directed RNA polymerase subunit alpha 156 440 IPR011773 GO:0003677|GO:0003899|GO:0006351
Phac8g01769 446 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 186 304 IPR036643 -
Phac8g01769 446 SUPERFAMILY RBP11-like subunits of RNA polymerase 138 358 IPR036603 GO:0006351|GO:0046983
Phac8g01769 446 SMART rpoldneu2 156 359 IPR011263 GO:0003899|GO:0006351
Phac8g01769 446 CDD RNAP_alpha_NTD 147 356 - -
Phac8g01769 446 Gene3D - 372 444 - -
Phac8g01769 446 Pfam RNA polymerase Rpb3/RpoA insert domain 192 285 IPR011262 GO:0003899|GO:0006351|GO:0046983
Phac8g01769 446 FunFam DNA-directed RNA polymerase subunit alpha 186 303 - -
Phac8g01769 446 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 383 440 - -
Phac8g01769 446 Gene3D Ribosomal protein S11 10 126 IPR036967 GO:0003735|GO:0005840|GO:0006412
Phac8g01769 446 Coils Coil 361 381 - -
Phac8g01769 446 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 163 352 IPR011263 GO:0003899|GO:0006351
Phac8g01769 446 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 378 439 IPR011260 GO:0003677|GO:0003899|GO:0006351
Phac8g01769 446 Hamap DNA-directed RNA polymerase subunit alpha [rpoA]. 133 446 IPR011773 GO:0003677|GO:0003899|GO:0006351
Phac8g01769 446 Pfam Ribosomal protein S11 28 125 IPR001971 GO:0003735|GO:0005840|GO:0006412
Phac8g01769 446 Gene3D - 156 351 IPR036603 GO:0006351|GO:0046983
Phac8g01769 446 SUPERFAMILY Translational machinery components 25 126 - -
Phac8g01769 446 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 124 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01769 28 116 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 29.091 5.41e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01769 K03040 - gmx:3989329 528.094