Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01767 ATGGAGAACAACGCATTCAGAGATCGAAACTTTGCGGATAATGAACACGAAGAAATCCCCGAATCCTTCGTATGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTACAATTCAATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTGCTTCTTAAGATTTATACTGTTGCTTACAAGAGAAGGGAAGACCAAACTCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTGTTACGAATTTGGCATCCAACTCATGTAATGTGGGAACTTCTGAATGTATGGAGCAATCAGGGTCCACCACCCATGAAAGAGACGAAGGAACAGTCTATTCCAATGGAGAGGCTGATATTATTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGAGATTTCTCTCCAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAAATGCTCTTTCATCCTGTAGTTCTTAATTGTGGGCATGTATACTGTCAAACTTGTGTCGTCAACAACACAGATGACGACACGCTCAGATGCCAAGTTTGTCAAAGTCCACATCCCAGAAGGTTTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACCACCCCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGAAAATAAAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCGCTGATTGTACGGAAAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACTCGTTCCAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAGCAATCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTGATCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACGGCCCCACTTTGTTTGATGATGCAGTAGATAACCACAGTGATTCTGAAGCCACCAATTGA 1269 0.4145 MENNAFRDRNFADNEHEEIPESFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQLLHFLLLKIYTVAYKRREDQTLEEEKKSGFYSPQFDPDTCESQAKFGHSGIPSSSSVTNLASNSCNVGTSECMEQSGSTTHERDEGTVYSNGEADIIGTPAKRKKLPQEEISLQQKLSVADVTCTMCKQMLFHPVVLNCGHVYCQTCVVNNTDDDTLRCQVCQSPHPRRFPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETTPSCSLDKGNKGENKDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLEQSNIIHNIMLRLATAQLGDTSIDLESVGNLEIASDGPTLFDDAVDNHSDSEATN* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01767 422 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Phac8g01767 422 FunFam E3 ubiquitin-protein ligase PRT1 187 283 - -
Phac8g01767 422 PANTHER UNCHARACTERIZED 16 385 - -
Phac8g01767 422 SMART ring_2 200 238 IPR001841 -
Phac8g01767 422 SMART ring_2 25 64 IPR001841 -
Phac8g01767 422 FunFam E3 ubiquitin-protein ligase PRT1 303 368 - -
Phac8g01767 422 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Phac8g01767 422 SUPERFAMILY RING/U-box 12 71 - -
Phac8g01767 422 Pfam Zinc finger, ZZ type 310 349 IPR000433 GO:0008270
Phac8g01767 422 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Phac8g01767 422 Gene3D - 302 368 IPR043145 -
Phac8g01767 422 SUPERFAMILY RING/U-box 195 243 - -
Phac8g01767 422 SUPERFAMILY RING/U-box 305 366 - -
Phac8g01767 422 Pfam RING-type zinc-finger 200 235 IPR027370 -
Phac8g01767 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 287 IPR013083 -
Phac8g01767 422 ProSiteProfiles Zinc finger RING-type profile. 200 239 IPR001841 -
Phac8g01767 422 ProSiteProfiles Zinc finger ZZ-type profile. 309 373 IPR000433 GO:0008270
Phac8g01767 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Phac8g01767 422 SMART zz_5 308 357 IPR000433 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01767 23 102 C3H Transcription Factor Family AT2G42030 31.250 4.27e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01767 - - gmx:100782681 771.926