Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01619 ATGGCATCGTTGGGATCTTCTTCTTCTTCATTCTGGTGCTACCGATGCAACCGCGTCGTTAGGGTTTCCCTCGCTACAGAAGGGCAGCCAGATCCTACCATTCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAAGAGCTCCACACGCCTCCCCACTCGCGTCGATCCACGCGCGCCGGCTCGCCCTTCAATCCCGTCATCATGCTGCGCGGCGGGGGCGGGAACGGAAACGAAAACGAAAACGCAAACGCCAACGAAAACGAAAACGACGTCGCCTCGGGGAACTTCGAGCTCTACTACAACGAGGGGGTTTCGGGTCCGGGCCCTCTACGCCCGCTGCCGGCCGGCGTTACCGACTTTCTGATGGGCTCGTCGGGCTTCGACCACTTGCTGGACCAGCTGGATGGCACCGCGGTGCGCCTCGACCGGGCGGCGTCGAAGGCGGCAATCGAGTCGATGCCGGTGGTGAAGATCCTGGCGAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAATTTTCAAGTGGATTGTGACGCACGGGAGATGCCGTGCGGGCACGTATATCACTCGGAGTGCATCGTGCCGTGGCTCTCCGTGCGGAACTCGTGCCCCGTGTGCCGGCGCGTGGTTCCTTCCGATGAAGTCCATGATAACAATTCGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGAGGTAGAGAACTCCCCCTCGTGTACACAGAGATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCGAGGAGAGTCTCCTGGGATTCGTCTATTGGTAGGTCTAGGGAGAGTAGGGGGTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATGTCGGAAGAGTTAGGAGTTCCTTTTCTCGTGGAACGAGAAACTCGCGTGTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 993 0.5841 MASLGSSSSSFWCYRCNRVVRVSLATEGQPDPTILCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIMLRGGGGNGNENENANANENENDVASGNFELYYNEGVSGPGPLRPLPAGVTDFLMGSSGFDHLLDQLDGTAVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVHDNNSMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYVGRVRSSFSRGTRNSRVNGRSRSATTIFSRFRSRSRF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01619 330 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Phac8g01619 330 SMART ring_2 169 209 IPR001841 -
Phac8g01619 330 SUPERFAMILY RING/U-box 149 216 - -
Phac8g01619 330 Pfam Ring finger domain 168 210 IPR001841 -
Phac8g01619 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 216 IPR013083 -
Phac8g01619 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 212 - -
Phac8g01619 330 FunFam E3 ubiquitin-protein ligase RNF181 136 216 - -
Phac8g01619 330 Pfam Protein of unknown function (DUF1117) 224 323 IPR010543 -
Phac8g01619 330 Pfam zinc-ribbon 10 47 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01619 Phac-Chr8 13815947 13819417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01619 112 217 C3H Transcription Factor Family AT5G01980 41.667 3.44e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01619 K11982 - gmx:121172634 453.366