Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01617 ATGTCGTTGCACCGTGGTGAAGAAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCTGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGCCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGACGAGGTTTATGCACAGATTACTCTGGTGCCTGAAAATAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACCCACGGTGGCTTCTCTGTCCTCCGGAAGCATGCCACGGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCTGTTCAAAACAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAACCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGACGAGGTCTGAAGGGGATGATTCTACTGAAACAGACAAAAGATTTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACAACAATATCATCTCAACCTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCCCCTACTTTCTGGGATGCTGGGCTGACACAGTCTGATATTACACAACTTGGTGTTATGGCCGAAAGCAAAAGGAGTGAAAGTAGTGCTCACATGTGGCATCATAACAGCAGCAATGGTATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTGTCCTTCTCATTTATATCTTGACACAACTGATGATAGCAAGAGCGTATCAGCTTCGCCTATTTCAAAAACTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGACAAGGAGATCAGCAAAGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGGATTGACCTTATTGATCATACAAGGAGCAGCTCTCTTTCTGTAGATAATGCATCTGGAGTCACATCAGAGGGCAGAACTGATGTAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCCCCAAAAGAGACTCAAAGCAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGGTATGAGAAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCGACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGCACAAACTGAGCTCTGGGAGCAAACTACCTATCTCTTCAACGGAAGAGATTGTAATAAGCTCAGACACAACTGAGATCTGA 1977 0.4426 MSLHRGEEDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEQETDEVYAQITLVPENNQTEPTCPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQNSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKTRSEGDDSTETDKRFSGTIIGVEDISPHWVNSKWRSLKVQWDEPPSFPRPDRVSPWEIEPILASVPTTISSQPVIKNKRPRQASEVPDLGDTPLIAPTFWDAGLTQSDITQLGVMAESKRSESSAHMWHHNSSNGISMNQRKASWLSCPSHLYLDTTDDSKSVSASPISKTHSERLNNDHCLDQVDKEISKVEPATGCRLFGIDLIDHTRSSSLSVDNASGVTSEGRTDVNHESDISKASKEWKQEQLQVSPKETQSKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEKLVDELEKMFDIKGQLRHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSTEEIVISSDTTEI* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01617 658 MobiDBLite consensus disorder prediction 499 537 - -
Phac8g01617 658 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Phac8g01617 658 Pfam AUX/IAA family 531 635 IPR033389 -
Phac8g01617 658 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Phac8g01617 658 FunFam Auxin response factor 543 636 - -
Phac8g01617 658 FunFam Auxin response factor 277 350 - -
Phac8g01617 658 ProSiteProfiles PB1 domain profile. 548 629 IPR000270 GO:0005515
Phac8g01617 658 SMART B3_2 116 218 IPR003340 GO:0003677
Phac8g01617 658 CDD B3_DNA 114 216 IPR003340 GO:0003677
Phac8g01617 658 Gene3D - 544 636 - -
Phac8g01617 658 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac8g01617 658 Gene3D - 277 350 - -
Phac8g01617 658 Gene3D - 113 217 IPR015300 -
Phac8g01617 658 FunFam Auxin response factor 114 218 - -
Phac8g01617 658 MobiDBLite consensus disorder prediction 513 527 - -
Phac8g01617 658 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Phac8g01617 658 SUPERFAMILY CAD & PB1 domains 551 624 - -
Phac8g01617 658 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01617 Phac-Chr8 13742199 13747495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01617 4 641 B3 DNA Binding Superfamily AT4G23980 59.327 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac8g01617 AUX_IAA 5.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01617 K14486 - gmx:100799088 1154.43