Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01401 ATGCACCGATTAATTCACTCCTCATTCTCTCGCACCACTCTTCCTTTTCTCTCTACAATAATGCCGGACCCTCACTCCACCACCGCGCTCCCGCCGGAAGAAACTGCATCCGCCACCTCTCAGACGCCGCCGGGCCGGTCACGCGAGGCGGAGCGTGTGCGCGGCACTTCCAGCAGAGGCATCTGGAGTATCGGCGATGGCTCCATCGCTTTTAGAGACGAAACCTGCTCCTGCTTCGCCGTTGTCTTCAGCTTTTGGTTATTCGTGTCGATGACTATGATACTGGGGGTTTATGGGTCCATGACCATCGTGCTTGGTCCAAAATCTTCGATAGTTTTCCAACCTAGTTCGGTATTCGTGAAATCTGTGAAGGTAGAAAATTTGGTGGCAAACCCTGGACCAGGACCCATTCTTTACGGTACATATGGGGATCCCCCACTTGATGTTGTTAGCTCTTGGGGTGAAACTCTTAATGTGTCTCTTCCCAATGGCGCAGAAAAGGAATGGAAAATTTATCTAAACAGAGGGAGTGTAATAAATATTTCGTATCACGTTAGTTCAAAGAGCTCTTCAGTTTTCCTTATAGTTGCACAAGGGAAGGATACCTTCACTCGGTGGCTGGAGAACCCAACAGAACCAAATACAACTCTTTCATGGAATGTGATTCATGGAAGTGGTATGATTACGCAGGAAATATTCTGGTCGTCCAGCTATTACGTGGCATTGGGTAATTTGGATGAGGACGTGGAGGTGGCATTAAACCTCAGTGTAAGCTCCTCTTTGCATAATACAACAAATGCTTACTACAAATGCGCTCTTACCAGTAGTCCATGCACTTTAGATATTTGCTTTCTTGATGGAAGTGCAGCTGTTTTAGTTACTCCTGGTCCACAACAGAATGCATCCAATGAATGGTATATCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGTGGATTGACTTTGCTTGTGTTTTGGACCTTCAATTTATTGAGCAATCTTCAGTCTGCTCATGAAGATAGAGCAGTAGTTATAACTGGGAGAACAGAACCTCAGAGAGCACCTCTGCTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCGTCATATGATTCCTTGCCACAAGACGAGGAGGATCTTGACTTTCTTCCAGGAGGTCCCATTGATGGGAAGCTTTCAGGTGATGGTGAAACCAGTAACAATACACGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGCTGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCAATGTTTGA 1392 0.4591 MHRLIHSSFSRTTLPFLSTIMPDPHSTTALPPEETASATSQTPPGRSREAERVRGTSSRGIWSIGDGSIAFRDETCSCFAVVFSFWLFVSMTMILGVYGSMTIVLGPKSSIVFQPSSVFVKSVKVENLVANPGPGPILYGTYGDPPLDVVSSWGETLNVSLPNGAEKEWKIYLNRGSVINISYHVSSKSSSVFLIVAQGKDTFTRWLENPTEPNTTLSWNVIHGSGMITQEIFWSSSYYVALGNLDEDVEVALNLSVSSSLHNTTNAYYKCALTSSPCTLDICFLDGSAAVLVTPGPQQNASNEWYIKLSYGPRWVTYIFGIGGLTLLVFWTFNLLSNLQSAHEDRAVVITGRTEPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLPGGPIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFNV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01401 463 MobiDBLite consensus disorder prediction 25 56 - -
Phac8g01401 463 Pfam Domain of unknown function (DUF4792) 135 203 IPR032008 -
Phac8g01401 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Phac8g01401 463 PANTHER OS05G0521000 PROTEIN 68 462 - -
Phac8g01401 463 MobiDBLite consensus disorder prediction 25 46 - -
Phac8g01401 463 Pfam Domain of unknown function (DUF4793) 227 330 IPR032010 -
Phac8g01401 463 FunFam E3 ubiquitin-protein ligase APD2 401 462 - -
Phac8g01401 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 462 IPR013083 -
Phac8g01401 463 SUPERFAMILY RING/U-box 411 457 - -
Phac8g01401 463 SMART ring_2 412 450 IPR001841 -
Phac8g01401 463 Pfam Zinc finger, C3HC4 type (RING finger) 409 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01401 Phac-Chr8 10870566 10881896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01401 385 460 C3H Transcription Factor Family AT3G06140 31.579 1.82e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01401 - - gmx:100791057 706.057