Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01254 ATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTGAGTGTGTCAAGTACACCTAGTGTTTCAAGTACAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGGATTTCACCTGATGGATTTGTTACTCAAGCCCCTTCCACAACAGATGTATTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGCATGCGACACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTTACATGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAGAGATTTTGGTCGCCCTCGTCTTGTTGAGTTTTTGGCAGTTACTAATATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCTGTGTCTACATCTGATGATCTTTTCTCCTGGGGTGATGGTACATACAATGCTGGACTTCTTGGACATGGAACCGATGTTAGCCATTGGATACCAAAGAAGGTTATTGGTCCTCTAGATGGACTTCAAGTTATCTCTATAGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTGCTGGGTCATGGAAATAGACAAAGTGTGTCATATCCAAAAGAGGTGCAGTTATTGAGTGGACTGAAAACTATTAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCTGGCTCAAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACTTGTGTCTCTACACTTATTGAATATAACTTCCACCAAATAGCATGTGGGCACACTATGACTGTTGCCCTAACTACATCTGGTCATGTCTTCACTATGGGAAACACTGAAAATGGTCAACTAGGAAATCCTTTTGCTGATGGAAAAGTACCAATCCTAGTGCAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAGTATCGTGTGGATCTCATCATGTTGCGGCCTTAACATCAAGAAGCGAACTATATACATGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTAGTGGAAGCCTTGAAAGATAGACATGTAAAGAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTATATGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACATAATTGTTATAACTGTGGATTAGTGCATTGTCATGGTTGCAGTTCAAGAAAGGTACTAAAAGCAGCCTTAGCTCCAACACCAGGAAAACCCCATCGTGTGTGTGACTCTTGTTATAATAAGCTGAAAGCTGTTGAGGCATGTACTAGTGCAAATCTTAATAGAAAAATCACTAGTACTATTTCTGCACCTCGCATTTCCATAGATTCCAGGGAAAGATTCGGCCAAGGAGAAATCAAATCTTCACGACTTATTTTGCCTCCCATCACAGAACCAGTCAAATATCATCAAATGTTGACTAATAAGCTGGGAAGCAGATATGATTATCCTTCCCTCACTCCATCTTCCCAAATTCCATCACTGCTACAATTGAATGACATTGCATTTCCAAATTCAATCAGTTCCTCTCAAAATATTTTGAAGTCTGCTATATCTTCTAATCCACCACCAATTTCACCTACCCTTGCAAGACCATCATCTCCTCATGCAAGAAGGCCAAGCTCACCACGTTCTCGAACTCAAGGATTTTCTAGAAGTCTCCTTGAAAGTTTGAAGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAGTTGCAAAACCAGATACGAAGTTTGAAGCAGAAAAATGGCAAGGAAATTGAAAAGTTTCAGAAATATGTTGGTGAAGTTACCTCCTTAGCTGTAGAGGAATCTTCTAAACATAAAACTACGAGAGAGTTTTTTAAGTCCACCATGGATCAGTTGAAGGAAATGATTGAGAAGTTGCCACCAGAAGCTTTAGATGGTGAAAATTGGAAAACCATAGTTACTGCAGCTGAAGATTTTCTGAGAGATAATGTAGAATCTGAAACACCAGCCATGTCCTCAAGTGCCAGTTTTGAACACCAAAATGTTCCTCATTCACTTGACTCAAATAATAATTCTTCTAAATTGCAAGAACAAAAAATAGAAGAACATGCTGAAACTGAAGGAGATGAATCATCATCACGAGATGAAGCAAATGTTCTTCAAAAAACTAGCTCATCTTTATCAAACAATGACACATCAATGTCTTCACAAAACTCTCTAAATTATTCAAAATCCCACGTCTCTTCAAGATCAATTAAAGAAGGAGAAACAGAAGTCATTGAACAATTTGAACCTGGCGTATATGTAACATTAATCGTAAAGCCTAATGGTGTCAAGGTTTTCAAACGGGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATGCAAACAAAGATAAGGTGCTTAAGAAATATAGTATTTTAGCAGCTACAAAATCTGAAGGTTCCGCGTCATCTAACACTCTACCACCACCTGCAGAAGAAAATGTGGTGGGAATCTCTTCCTAA 2700 0.3926 MQPRTSIGDGFRVSVSSTPSVSSTGSGPDDIESLGDVYIWGEVWADGISPDGFVTQAPSTTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGIDRDFGRPRLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNAGLLGHGTDVSHWIPKKVIGPLDGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPFADGKVPILVQDKLVGEFVEEVSCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACTSANLNRKITSTISAPRISIDSRERFGQGEIKSSRLILPPITEPVKYHQMLTNKLGSRYDYPSLTPSSQIPSLLQLNDIAFPNSISSSQNILKSAISSNPPPISPTLARPSSPHARRPSSPRSRTQGFSRSLLESLKKTNELLNQEVSKLQNQIRSLKQKNGKEIEKFQKYVGEVTSLAVEESSKHKTTREFFKSTMDQLKEMIEKLPPEALDGENWKTIVTAAEDFLRDNVESETPAMSSSASFEHQNVPHSLDSNNNSSKLQEQKIEEHAETEGDESSSRDEANVLQKTSSSLSNNDTSMSSQNSLNYSKSHVSSRSIKEGETEVIEQFEPGVYVTLIVKPNGVKVFKRVRFSKRRFHEHQAEEWWNANKDKVLKKYSILAATKSEGSASSNTLPPPAEENVVGISS* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01254 899 Coils Coil 623 657 - -
Phac8g01254 899 Gene3D - 259 431 IPR009091 -
Phac8g01254 899 Gene3D - 16 258 IPR009091 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 775 805 - -
Phac8g01254 899 Pfam Transcription factor regulating root and shoot growth via Pin3 814 869 IPR013591 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 1 29 - -
Phac8g01254 899 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 147 196 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Phac8g01254 899 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 877 899 - -
Phac8g01254 899 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 684 - -
Phac8g01254 899 SMART fyve_4 417 486 IPR000306 GO:0046872
Phac8g01254 899 Pfam FYVE zinc finger 419 485 IPR000306 GO:0046872
Phac8g01254 899 MobiDBLite consensus disorder prediction 724 753 - -
Phac8g01254 899 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Phac8g01254 899 ProSiteProfiles BRX domain profile. 815 870 IPR013591 -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Phac8g01254 899 CDD FYVE_like_SF 429 481 - -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 76 89 IPR000408 -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Phac8g01254 899 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 586 619 - -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Phac8g01254 899 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Phac8g01254 899 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
Phac8g01254 899 SUPERFAMILY FYVE/PHD zinc finger 419 490 IPR011011 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 754 774 - -
Phac8g01254 899 Pfam Transcription factor BRX N-terminal domain 671 703 IPR027988 -
Phac8g01254 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 491 IPR013083 -
Phac8g01254 899 SUPERFAMILY RCC1/BLIP-II 35 420 IPR009091 -
Phac8g01254 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Phac8g01254 899 MobiDBLite consensus disorder prediction 723 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01254 Phac-Chr8 9115988 9119950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01254 812 871 Major Intrinsic Protein MIP AT1G31880 40.000 8.44e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01254 - - gmx:100779684 1423.68