LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g01221	ATGAGTTTCCGAGAGGGAAAGTTAGGAGAAGAGAGGGAATGTGAAGAATCGGTCTTGGGGATCACTGAATCCAAATCAGTGAGGGAAAATGGGTCATTGACAGCCACACAGCTAACAATTGATGAGAATCTATTGGTTGACCCTAAACTACTCTTCATTGGGTCCAAGATTGGTGAAGGAGCTCATGGTAAAGTTTATGAAGGAAGGTATAGAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCCGAAGAAAGAGCTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCTCTTATGGTAATAGTTACAGAGTTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCCATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCCAATGGAATCATACACAGAGATCTGAAACCTGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCAAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTTCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCCTGCATTCCAGATGATATATCCCCTGAACTTGCTTTTGTCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCCAGTTTTAGTCAGATCATCCGCATGCTCAATGCGTTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCACCACCTAACAATCAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTTTCTGCCCGAAACAGAGGAAGGTTTGGTTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAA	1107	0.43	MSFREGKLGEERECEESVLGITESKSVRENGSLTATQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQERPCIPDDISPELAFVIQSCWVEDPNMRPSFSQIIRMLNAFLFTLSPPSPPLPPPNNQPEVATTSNGTITEFSARNRGRFGFLRQLFSSKRTKN*	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g01221	368	ProSitePatterns	Protein kinases ATP-binding region signature.	57	78	IPR017441	GO:0005524
	Phac8g01221	368	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	51	313	-	-
	Phac8g01221	368	ProSiteProfiles	Protein kinase domain profile.	51	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g01221	368	Gene3D	Phosphorylase Kinase; domain 1	39	130	-	-
	Phac8g01221	368	SUPERFAMILY	Protein kinase-like (PK-like)	50	337	IPR011009	-
	Phac8g01221	368	CDD	STKc_MAP3K-like	57	312	-	-
	Phac8g01221	368	Gene3D	Transferase(Phosphotransferase) domain 1	134	322	-	-
	Phac8g01221	368	PRINTS	Tyrosine kinase catalytic domain signature	165	183	IPR001245	GO:0004672\|GO:0006468
	Phac8g01221	368	PRINTS	Tyrosine kinase catalytic domain signature	283	305	IPR001245	GO:0004672\|GO:0006468
	Phac8g01221	368	PRINTS	Tyrosine kinase catalytic domain signature	127	140	IPR001245	GO:0004672\|GO:0006468
	Phac8g01221	368	PRINTS	Tyrosine kinase catalytic domain signature	239	261	IPR001245	GO:0004672\|GO:0006468
	Phac8g01221	368	Pfam	Protein tyrosine and serine/threonine kinase	53	312	IPR001245	GO:0004672\|GO:0006468
	Phac8g01221	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Phac8g01221	368	FunFam	Kinase suppressor of Ras 1	40	130	-	-
	Phac8g01221	368	SMART	serkin_6	51	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g01221	Phac-Chr8	8646650	8651257	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g01221	39	368	MAP Kinase Kinase Kinase	AT5G01850	74.438	0.0	512

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Phac8g01221		PK_Tyr_Ser-Thr	3.6e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g01221	-		-	qsu:111990547	580.482