Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01215 ATGACGCAACGGCGGTTTCTGGAGACGGAGCTGAGCATGCCACCGTCGTACGGCAACAACACGCGTGACACGTTCATCAGCGACGCCAACTTCGATACCAACATGGTGATCATTCTGGCGGCGCTGCTGTGCGCGCTGATATGCGCGCTGGGGCTGAACTCCATCGCGCGGTGTGCGCTTCGGTGCGGGCGGCGCTTCCGCGATGAGACGGCGGAGCAGGCGGCGGCGCGCCTTGCGGGGACGGGGCTGAAGCGGCGTCAGCTCAGCCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACCGTCCCGGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAGTGCAACCACGGCTTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCGCGCCGGAGAGTGGGTCCCGCCGGAGGAGCGACGTCGTGGTGGTGGTGGAGCCGCCGAGTTGA 537 0.6667 MTQRRFLETELSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFRDETAEQAAARLAGTGLKRRQLSRIPVAVYGASGETVPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPAAPESGSRRRSDVVVVVEPPS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01215 178 PANTHER RING-H2 FINGER PROTEIN ATL78 12 158 IPR044602 GO:0016567|GO:0016740
Phac8g01215 178 SUPERFAMILY RING/U-box 101 157 - -
Phac8g01215 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Phac8g01215 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Phac8g01215 178 SMART ring_2 108 149 IPR001841 -
Phac8g01215 178 CDD RING-H2_EL5-like 107 150 - -
Phac8g01215 178 Pfam Ring finger domain 107 150 IPR001841 -
Phac8g01215 178 SMART FANCL_C_2 104 157 - -
Phac8g01215 178 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01215 Phac-Chr8 8603836 8604372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01215 5 174 C3H Transcription Factor Family AT3G10910 55.056 5.01e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01215 K19040 - gmx:100814602 300.441