Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01149 ATGGCTGCGAATTCTGGGAACATCTCATTTGCATCGTCTCAATCTGGTTCACAGGTACATGGGGATACTGATTCTGTCCATGTTGCAGTGTGCTCTCTTTGTCAAAAGTCCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTATCAATGGTGTGTGTGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTAGCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCATAACAGTTCTGAATCCGTGGATAATTCATCACAGCAGATCCCTCATGTGGTTAGTACCGTGAGACAATATCAATCACCTGCCTCTGGGGAGGATGATCAACTTGTAGATGGTGACACCCCTGCTTGGTCTATGCAATATGCTAGTACACACACTACCCCGAGTGGGTCTAGAAGGTGGAGGCACGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTTTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGATACAGGGTTTCCCATGGTGAGACTGATTCTTTGTCTCACAGTGCTTATGGAGGTGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGAGAGATGAGTTCGATAGTGACACCGACATTGATCCAATGCACGCTGGCCGTGGCCAGTGGTTTTCAGATGAAGATGATGAAGAAGAGGATGAAGATGGGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGATGAAGAGGAGGTGGAGGAGGATAGGGAATGGCAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGTCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCAGGGATCACAATAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCAGATAATCAGGGATACTTGGCAAGCTTTAGAGGATGCTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCCGCTGTGTCTTTCATGAAAAATCTGCCACGTATAGTCATTGGCAAGGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTCTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGAAATTCGTGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAACAAAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATTGATGTTATAGATGATAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAGAATGGTAATAGTCAAGATGAAATACAGCAGAGGGATGTAAGCACAGGTTCTACCGCAATTTCTTCTACAACAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAGGGAAACAGACATCTGGGCAGTCATTACTTATCCGGGCATAATCATCATGCCGTCCATGCTTATTCTGCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1731 0.4362 MAANSGNISFASSQSGSQVHGDTDSVHVAVCSLCQKSLSHDNEMASDLAINGVCGDCKFLLLEDFGNHTVSQSSRRRLRGRFRHNSSESVDNSSQQIPHVVSTVRQYQSPASGEDDQLVDGDTPAWSMQYASTHTTPSGSRRWRHVLSDTDSDGFDNWNSFYGENESSVSFRRYRVSHGETDSLSHSAYGGDSDISMDTHSFVGTGVFNLPDERDEFDSDTDIDPMHAGRGQWFSDEDDEEEDEDGEEEEEEEEEEEEEEDDEEEVEEDREWQLAEAEEAEATARLQIFFTSSPSESRDHNNWEQRFNSTESEGMFSQIIRDTWQALEDADLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMKNLPRIVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQIDVIDDSSSDVSDGDEVNEENGNSQDEIQQRDVSTGSTAISSTTSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGHNHHAVHAYSAPNQRESRSRRWWCPF* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01149 576 MobiDBLite consensus disorder prediction 484 503 - -
Phac8g01149 576 MobiDBLite consensus disorder prediction 211 272 - -
Phac8g01149 576 MobiDBLite consensus disorder prediction 1 20 - -
Phac8g01149 576 CDD RING-H2_PA-TM-RING 391 433 - -
Phac8g01149 576 Pfam Ring finger domain 392 433 IPR001841 -
Phac8g01149 576 SMART ring_2 392 432 IPR001841 -
Phac8g01149 576 SUPERFAMILY RING/U-box 373 439 - -
Phac8g01149 576 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 352 439 - -
Phac8g01149 576 Coils Coil 237 283 - -
Phac8g01149 576 MobiDBLite consensus disorder prediction 466 503 - -
Phac8g01149 576 MobiDBLite consensus disorder prediction 235 272 - -
Phac8g01149 576 MobiDBLite consensus disorder prediction 469 483 - -
Phac8g01149 576 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 247 437 - -
Phac8g01149 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 439 IPR013083 -
Phac8g01149 576 ProSiteProfiles Zinc finger RING-type profile. 392 433 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01149 Phac-Chr8 8174689 8178050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01149 23 576 C3H Transcription Factor Family AT5G01980 43.206 6.52e-121 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01149 - - pvu:PHAVU_008G078700g 1054.66