Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01098 ATGAGTTTCTTTCAGGGAATTATTGATTCCTTTAACTCCATCTTCGTCCCTCATAACAATCACAACACCGCAAATTCACCATCTCTTTCTTCTCCTTCGGCGGATCCAATGGAAGCTCCTCCTCCTTCTGTTTCGAACGACCGTGTGGCTTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCCAAGGCCGTTAGGGCTGAGGAATGGGGTTTGGTCGACGATGCGCTTCTCCACTACAGAAACGCGCAATCGATCCTCGTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTCCCAGCGAACAGCAGAAGGTGCAGTCGTATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTCTCTAGACGAGCTGGTAGCTCATCTGCCAATCAGAGCACTGCTGCAGTACCGCTTAAGCCATTGGGTACTAGAAAGAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCGAGTCAAGCATCTGGTGTAAATTATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGACAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCCGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAAATGGTTATTTTACCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCGCAAGCAACATTTTTTAATATCACGGCAGCCTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCGCATGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGCTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTGGAGAGGGTTGTAAAAGAGACAGAAAGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTGAGATACGAAGATTTTAAGAAGGCAATGGCTACAATTAGACCAAGTTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAATTTGGCTCTAATTGA 1437 0.4363 MSFFQGIIDSFNSIFVPHNNHNTANSPSLSSPSADPMEAPPPSVSNDRVAYKLKGYFDLATQEIAKAVRAEEWGLVDDALLHYRNAQSILVEANSTPVPSYITPSEQQKVQSYREKISKWQSQVSERLQTLSRRAGSSSANQSTAAVPLKPLGTRKNVLQKPPQRTGQVNKVGSPKSSQASGVNYDTKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNITAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPHELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERVVKETERYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMATIRPSLNKSKWEELERWNEEFGSN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01098 478 CDD MIT_spastin 53 131 - -
Phac8g01098 478 MobiDBLite consensus disorder prediction 131 148 - -
Phac8g01098 478 Pfam ATPase family associated with various cellular activities (AAA) 243 373 IPR003959 GO:0005524|GO:0016887
Phac8g01098 478 SMART smart 53 130 IPR007330 -
Phac8g01098 478 MobiDBLite consensus disorder prediction 159 181 - -
Phac8g01098 478 FunFam Spastin, putative 202 386 - -
Phac8g01098 478 SMART AAA_5 239 375 IPR003593 GO:0016887
Phac8g01098 478 CDD RecA-like_spastin 208 371 - -
Phac8g01098 478 Gene3D - 202 472 IPR027417 -
Phac8g01098 478 PANTHER AAA DOMAIN-CONTAINING 108 477 - -
Phac8g01098 478 MobiDBLite consensus disorder prediction 131 181 - -
Phac8g01098 478 Pfam Vps4 C terminal oligomerisation domain 444 476 IPR015415 -
Phac8g01098 478 ProSitePatterns AAA-protein family signature. 345 364 IPR003960 GO:0005524|GO:0016887
Phac8g01098 478 Gene3D - 374 456 - -
Phac8g01098 478 Gene3D - 46 135 - -
Phac8g01098 478 MobiDBLite consensus disorder prediction 24 43 - -
Phac8g01098 478 FunFam AAA-type ATPase family protein 374 456 - -
Phac8g01098 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 475 IPR027417 -
Phac8g01098 478 Pfam AAA+ lid domain 398 429 IPR041569 -
Phac8g01098 478 FunFam AAA-type ATPase family protein 46 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01098 Phac-Chr8 7672931 7678767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01098 184 428 Calmodulin-binding Proteins AT3G56690 40.157 3.35e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01098 K13254 - gmx:100780946 856.284