LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g01096	ATGAGTTTCTTTCAGGGAATTATTGATTCCTTTAACTCCATCTTCGTCCCTCATAACAATCACAACACCGCAAATTCACCATCTCTTTCTTCTCCTTCGGCGGATCCAATGGAAGCTCCTCCTCCTTCTGTTTCGAACGACCGTGTGGCTTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCCAAGGCCGTTAGGGCTGAGGAATGGGGTTTGGTCGACGATGCGCTTCTCCACTACAGAAACGCGCAATCGATCCTCGTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTCCCAGCGAACAGCAGAAGGTGCAGTCGTATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTCTCTAGACGAGCTGGTAGCTCATCTGCCAATCAGAGCACTGCTGCAGTACCGCTTAAGCCATTGGGTACTAGAAAGAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCGAGTCAAGCATCTGGTGTAAATTATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGACAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCCGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAAATGGTTATTTTACCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCGCAAGCAACATTTTTTAATATCACGGCAGCCTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCGCATGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGCTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAAGCAATGTGCTCTCATATTTTATGTTTTGTGA	1221	0.4382	MSFFQGIIDSFNSIFVPHNNHNTANSPSLSSPSADPMEAPPPSVSNDRVAYKLKGYFDLATQEIAKAVRAEEWGLVDDALLHYRNAQSILVEANSTPVPSYITPSEQQKVQSYREKISKWQSQVSERLQTLSRRAGSSSANQSTAAVPLKPLGTRKNVLQKPPQRTGQVNKVGSPKSSQASGVNYDTKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNITAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPHELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSKQCALIFYVL*	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g01096	406	PANTHER	AAA DOMAIN-CONTAINING	108	392	-	-
	Phac8g01096	406	CDD	MIT_spastin	53	131	-	-
	Phac8g01096	406	MobiDBLite	consensus disorder prediction	131	148	-	-
	Phac8g01096	406	SMART	smart	53	130	IPR007330	-
	Phac8g01096	406	MobiDBLite	consensus disorder prediction	159	181	-	-
	Phac8g01096	406	SMART	AAA_5	239	375	IPR003593	GO:0016887
	Phac8g01096	406	CDD	RecA-like_spastin	208	371	-	-
	Phac8g01096	406	Gene3D	-	46	135	-	-
	Phac8g01096	406	FunFam	Spastin, putative	202	386	-	-
	Phac8g01096	406	Pfam	ATPase family associated with various cellular activities (AAA)	243	373	IPR003959	GO:0005524\|GO:0016887
	Phac8g01096	406	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	388	IPR027417	-
	Phac8g01096	406	Gene3D	-	374	398	-	-
	Phac8g01096	406	MobiDBLite	consensus disorder prediction	131	181	-	-
	Phac8g01096	406	ProSitePatterns	AAA-protein family signature.	345	364	IPR003960	GO:0005524\|GO:0016887
	Phac8g01096	406	FunFam	AAA-type ATPase family protein	46	135	-	-
	Phac8g01096	406	MobiDBLite	consensus disorder prediction	24	43	-	-
	Phac8g01096	406	Gene3D	-	202	373	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g01096	Phac-Chr8	7672931	7678767	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g01096	238	398	Calmodulin-binding Proteins	AT3G56690	35.583	6.23e-25	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g01096	K13254		-	gmx:100780946	699.893