Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01080 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGCGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTCCAAGAGGAAAACTTTACGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTTCTCAAACAGTGAACAGATCTGATGAACAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGACCTACTCGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGCTTGGGTTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAGATTGAGCAATTGAAAGAAAAGGAAAGAAGCCTATATGCTGAAAATGTCAGGCTGTGTGAGCAGTATGGTATCCAGCAACAGCCAGGAACAAAGGATGTGAGAGAAAATCAACCCTATGAAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCTAGGTCTAGTTGA 630 0.4397 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSSQTVNRSDEQNMQHLKQETANLMKKIDLLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERSLYAENVRLCEQYGIQQQPGTKDVRENQPYEESSPSSEVETELFIGLPRSS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01080 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Phac8g01080 209 Coils Coil 80 107 - -
Phac8g01080 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Phac8g01080 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 MobiDBLite consensus disorder prediction 174 198 - -
Phac8g01080 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Phac8g01080 209 MobiDBLite consensus disorder prediction 174 209 - -
Phac8g01080 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Phac8g01080 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g01080 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac8g01080 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g01080 209 FunFam MADS-box protein SOC1 14 95 - -
Phac8g01080 209 Coils Coil 121 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01080 Phac-Chr8 7517016 7531103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01080 1 156 MADS-box Gene Family AT2G45660 77.564 8.86e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac8g01080 K-box 6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01080 - - gmx:100037477 370.933