LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g00970	ATGGCAACTGATATGCAGAGGCTTGTGGGAACGAGTGAGGATGATGAAGAAATGGGAATGGATGTAAAAGATGAGGATGAAGAAGATGATGATTATGAGGAAAATGGAGGCGAGCAGGGAAATGCTTCAGGGATGGTGGGGATTGATGGTGGGAATGAGATGGGAACTGCCACTGGTGACAACAGGTTTCCGCAGCACCAGCAGTTTCATGAACAAGTAGGCACCCCCGGTGGAGGTACTCGAAGATCGAGGCCGGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAAAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTTCGCAGGCATGGAAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCTAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACCATTGTAACTTCATCATCTTCCCATGTGGCTTCACAACAAACTCCATCCCCTTCTCTTAGGGGAGTTGCTTCTGGCCATAGGAGCCCTTTAGAGTATAGTGCATCGAAAGGTGTTTTTATGCCAACTCCATCTCCTTATAATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTGGGGGATGGAGAAGCACAAAGAGACAACCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGAGAAGCAGATTGCTGACTTGCCCCCCAGATTACCCGAGCGTGATTTGGCTGGTACCCCGTATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCTGATGGTCTGCTAAAGCAGCTGAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGATTGTTGGTGGGGAATAGTGGAGGCCCATGCTCCACAAGAGTATATTTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTGCAGGTTGTTATGTCATTTCATGAATGTGGAGGGAATTTTGGTGATGATGTTTGTATTCCATTGCCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGACAAGGAACGAGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGGTTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTACGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCTAGAGGGCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGGTAAGTTAA	1644	0.4526	MATDMQRLVGTSEDDEEMGMDVKDEDEEDDDYEENGGEQGNASGMVGIDGGNEMGTATGDNRFPQHQQFHEQVGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQKPAGGNSTIVTSSSSHVASQQTPSPSLRGVASGHRSPLEYSASKGVFMPTPSPYNLSSTSRSQTSIVGDGEAQRDNRPLIGGSMDNADEKQIADLPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYIWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKVS*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	17	36	-	-
	Phac8g00970	547	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	217	547	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	1	96	-	-
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	144	182	-	-
	Phac8g00970	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	318	336	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	297	311	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	506	525	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	433	455	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	340	361	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	58	74	-	-
	Phac8g00970	547	Pfam	BES1/BZR1 plant transcription factor, N-terminal	79	214	IPR008540	-
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	82	96	-	-
	Phac8g00970	547	Gene3D	Glycosidases	254	547	-	-
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	204	223	-	-
	Phac8g00970	547	SUPERFAMILY	(Trans)glycosidases	259	543	IPR017853	-
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	144	188	-	-
	Phac8g00970	547	Pfam	Glycosyl hydrolase family 14	266	546	IPR001554	GO:0000272\|GO:0016161
	Phac8g00970	547	MobiDBLite	consensus disorder prediction	204	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g00970	Phac-Chr8	6523510	6529927	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g00970	1	546	Glycoside Hydrolase	AT2G45880	68.000	0.0	759

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Phac8g00970		Glyco_hydro_14	5.3e-78	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g00970	K01177		-	gmx:100805560	972.23