Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00896 ATGATGGATTTCGTAGGCCCAGTTTTGGACATCATAATTCGGTTGTGGGACTGTTGTGCCTTCGTCCGTGAGTATGAAGAGAACCTTTCTTGTTTGAGGGACATGGCATCTGATCTTCAGGGCCTTTGGGTTGATGTGACTGTGAAGGTTCAACTGGCTGAGGCACAACACTTGAGGCGTCTGAATGAGGTGAATGATTGGTTGGATAAAGTTGAAGCTATGCAAAGAGAAGTCCAAGCTATTCAGCAGAGAGTTGCTCATGTTCAAGAAACACGTAGCAGATGCTTGGCAAATTTTCCAACAAGCTGCAGGATGGGAAGGATTGTAACTCAAAAAATAGGTGAGATTCGTAAACTTATTGATAAAGGGCACTTTGATGTAGTGGCTCAGGAAATGCCATATGCTTTGGTAGATGAAATCCCTCTAGAGGTCACAATTGGTCTAGAATCAACCTTTGATGAACTTGGTAAATGTTTTGATGATAATAATATGGGAATTATTGGCTTGTTTGGCATGGGGGGTGTAGGAAAGACAACTCTGCTCAAAAAGTTCAACAATGAGTTCCTTCCCTCAAAATTTTATGATGCAGTCATTTGGGTTGTGGTGTCTAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATTGGTGACAAATTAAATGTTCCTGTTGGTAAATGGGCTGGTAAGACTATTAATGACAGAGCTATTGTTTTATACAACTTTTTGAAGAGGAAGAAGTTTGTGTTGCTGCTAGATGATTTATGGGAGCGTATGGATCTTCTGAAGTTGGGGATTCCTATCCCTGATATGGAAAACGGATCTAAAGTGATATTCACAACAAGGTCCATGGAGGTTTGCAGGAACATGGAAGCCAACAGATGCATCAAAGTAGAGTGTTTAGCACAAGAGGAAGCATTTGAATTGTTCAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCCTCTGGCTCAAATTTTGGCCCAGGAGTGTCAGGGACTTCCTCTAGCACTCATCACTGTCGGAAGATCTATGGCTCGAAAGACTCTCCCTGAATGGAAGCGAGCAGCACGAACCTTGAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTCTATTGTTTGCTTGAGTTTAGCTATGACAGTTTACCAAGTGCCACTCACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAGGACTATGATATTAGAAAAGATGAACTAATTCAACTGTGGATTGGGGAAGGTCTTTTAGCTGAATTTGGTGATGATGTCTATGAAGCGCGCATCCAAGGAGAAGAAATCATCGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGAGAAAATAGGATTAAGATGCATGATGTGATCAGGGACATGGCTTTGTGGCTAGCCTGTGATCATGGATCCAACACCAGATTTTTGGTGAGAGATGGCGCAAGCAGCGGTTCAGTTGAAACATATAATCAGGCAAAGTGGAAAGAAGTAGAGAAAGTATCAATGTGGAGGCACAGCTGTCAAAAACTCAGGAAAACCAGAGTTGATTGCTCAAGTCTCTTGACTATGCTCGTTAGAAATACCGAGATCACCAACTTCCCAGATGAGATTTTTCTGACTGCAAACCATCTTAGAGTGTTAGACTTGTCAGGTAATAAAAGAGTAAGAGAATTACCTTCCAGTATTGGGGAGTTAGTTGAATTGCAGCATTTGGATCTATCAGGTACTGATATACAAATATTGCCAAGGGAGCTCCAGAACTTGAAAAAATTGAGATGCCTGCTGCTGAATTATATTTGCAATAGGCTTGTCTTCCCAAGGAGTTTGATATCAAGTTTGGTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAGTTTATTCTTCCTGATTTAGGGGAACCTGAGGAAACTGTATTACTCAATTCTCCCAAATTGCAAAGATGCATTAGACATCTGAGAATAATTTCTCCTTTCAATTCAACACCACAAGTTATATTATTCTCATTTCTAACAAAAATGCAACATCTAGAGGTATTGTCCATGTCAATTTCTTCATCTTCAAGTTTAGACCATGTCAGGAAAAAGGAGTCTCCATCACATGGTTCTATGATTGAGTGCATTCCCGTAAGTTCTAAGCTCACTGAGCATTGTTACATTGTTGGCCTTCGTGAGTTATCCCTTGAAGGGTGTGGCATGTTCAACTTGAATTGGCTCACTCGTGCTCCAAGCCTTCAACTCCTTAGAATATACAATTGTCCCTCCTTGGAAGAAATCATAGGTGAAGAATTTGAAGATGCAGAAAATGTTTTTTCAAGTCTTGAAGTTATTGATCTAGATTCTTTGCCAAAGTTAAGGAGCATATGCTCACAGATTTTACAATTTCCTTGTCTTAAGGAGATCTGTGTAAAAGATTGTCCAAAGCTGATAAAGCTCCCTTTTGATTCCAATAGTGCAAGGAACAGTCTGAAGCACATAAATGGAGAGAAAAGGTGGTGGCGTAAATTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTTGGTTCAAAATATGTAGCATTGCAGCGCAGCTTCACACAAGACCCTGAAATGGGTTATCTGAGCAAAGCTTCCAAAACCCTAAGGCAATCGAATTACTTATCGTTGTTATGCAGTTTCAATTTCAATTTCAACCCATTAACCAACAGAATAACCCATGAACGCTTTTCTATGAGGCGTGAACTGTTCTGTTCACAGTCACGCCAATACAGCACCACCACGAGGGAGAAAAGCAACATAGATTTGAGCCAATACCCTCCAGAGCTCATTAGAAACTTTTCAATCATTGCGCACGTGGATCATGGCAAGTCCACCCTCGCTGATCGGCTTTTAGAACTCACTGGAACCATTAAGAAAGGCCATGGCCAGCCCCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGAGGAATCACGGTTAAAGCCCAGACAGCAACAATGTTCTATAAGCACAGTGTAAATGGTGATGATTGCAGTGATGGAAAGGAGTCACCTAATTTTTTGCTAAATCTTATTGATACTCCTGGACATGTTGATTTTAGTTATGAAGTGTCCAGATCATTGGCAGCTTGTCAAGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTCCAAGCACAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTAACAATTGTGCCTGTAATAAACAAGATTGATCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAATTGAAATCAATGTTTGATCTTGATCCAAATGATGCACTGCTAACATCTGCTAAAACTGGAGTGGGTCTTGAGCAAATCCTTCCGGCTGTCATAGAGCGCATACCTGCCCCTCCTGGGAGGAGTGAATCTCCTCTTCGCATGCTTTTACTTGATTCATATTATGATGAATACAGAGGGGTAATATGTCATGTCGCTGTTGTTGATGGTGTCCTGAACAAGGGGGATAAGATTTCGTCTTCAGCTACTGGTCAGTCGTATGAAGCTTTAGATATAGGCATCATGCATCCTGAACTTACGCCTACTGGTATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGATCAACTAAAGAGGCCCGTGTTGGTGATACAATTTACCGTACTCGGACTGTCGTAAAGCCTCTTCCAGGCTTTAAGCCAGCAAAACATATGGTGTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCACGCAATAGAGAGGTTGACATGCAATGATGCCAGTGTCTCTATTGCTAAAGAAACTAGCACTGCTCTAGGTCTGGGGTTCAGGTGTGGGTTTTTAGGCCTCCTGCACATGGATGTTTTTCATCAACGACTTGAACAGGAGTACGGAGCTCATATTATCTCAACTGTTCCTACTGTGCCTTACATATTTGAGTTTTCTGATGGAAGCAAGTTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAAAAAGTGACAGCCTGTTGGGAACCAACAGTAATGGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGAGGTCAGCAGTTGGAGTATTCATTCATTGACAGTCAACGGGTATTCATGAAGTACCGCTTGCCTCTGAGAGAAATTGTTGTTGACTTTTACAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTACGAGGATTCAGATTATCAACAAGCTGATCTGGTAAAACTTGATATTCTCTTGAATGCACAACCAGTTGATGCAATGGCAACCATAGTTCATAACACGAAAGCATATCGTGTTGGGCGGGAACTGACAGAGAAATTGAAAACTGTCATAGACAGGCAAATGTTCGAGATAACCATACAAGCTGCCATTGGGTCAAAAATCATAGCAAGGGAGACGATTTCTGCAATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACACGAAAAAGGAAGCTATTGGAGAAGCAAAAAGAAGGAAAGAAGAGAATGAAGCGTGTTGGTTCTGTTGATATACCACAGGAAGCATTTCACCAACTATTGAAAGTTTCTTAG 4650 0.4131 MMDFVGPVLDIIIRLWDCCAFVREYEENLSCLRDMASDLQGLWVDVTVKVQLAEAQHLRRLNEVNDWLDKVEAMQREVQAIQQRVAHVQETRSRCLANFPTSCRMGRIVTQKIGEIRKLIDKGHFDVVAQEMPYALVDEIPLEVTIGLESTFDELGKCFDDNNMGIIGLFGMGGVGKTTLLKKFNNEFLPSKFYDAVIWVVVSKEADVGSVQQSIGDKLNVPVGKWAGKTINDRAIVLYNFLKRKKFVLLLDDLWERMDLLKLGIPIPDMENGSKVIFTTRSMEVCRNMEANRCIKVECLAQEEAFELFREKVGEETLNSHPEIFPLAQILAQECQGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSATHKSCFLYCSIFPEDYDIRKDELIQLWIGEGLLAEFGDDVYEARIQGEEIIASLKFACLLEDSERENRIKMHDVIRDMALWLACDHGSNTRFLVRDGASSGSVETYNQAKWKEVEKVSMWRHSCQKLRKTRVDCSSLLTMLVRNTEITNFPDEIFLTANHLRVLDLSGNKRVRELPSSIGELVELQHLDLSGTDIQILPRELQNLKKLRCLLLNYICNRLVFPRSLISSLVSLQVFSKLPWEDQFILPDLGEPEETVLLNSPKLQRCIRHLRIISPFNSTPQVILFSFLTKMQHLEVLSMSISSSSSLDHVRKKESPSHGSMIECIPVSSKLTEHCYIVGLRELSLEGCGMFNLNWLTRAPSLQLLRIYNCPSLEEIIGEEFEDAENVFSSLEVIDLDSLPKLRSICSQILQFPCLKEICVKDCPKLIKLPFDSNSARNSLKHINGEKRWWRKLQWEDEATRDHFGSKYVALQRSFTQDPEMGYLSKASKTLRQSNYLSLLCSFNFNFNPLTNRITHERFSMRRELFCSQSRQYSTTTREKSNIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDDCSDGKESPNFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPNDALLTSAKTGVGLEQILPAVIERIPAPPGRSESPLRMLLLDSYYDEYRGVICHVAVVDGVLNKGDKISSSATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYRTRTVVKPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSIAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIFEFSDGSKLEVQNPASLPSNPKQKVTACWEPTVMATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQQADLVKLDILLNAQPVDAMATIVHNTKAYRVGRELTEKLKTVIDRQMFEITIQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLKVS* 1550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00896 1549 SUPERFAMILY EF-G C-terminal domain-like 1353 1447 IPR035647 -
Phac8g00896 1549 Gene3D - 386 472 IPR036388 -
Phac8g00896 1549 FunFam Translation factor GUF1, mitochondrial 1319 1431 - -
Phac8g00896 1549 FunFam Probable disease resistance protein At5g66910 299 385 - -
Phac8g00896 1549 FunFam Translation factor GUF1, mitochondrial 1433 1507 - -
Phac8g00896 1549 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 984 999 IPR031157 -
Phac8g00896 1549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 943 1157 IPR027417 -
Phac8g00896 1549 PRINTS Disease resistance protein signature 335 349 - -
Phac8g00896 1549 PRINTS Disease resistance protein signature 548 564 - -
Phac8g00896 1549 PRINTS Disease resistance protein signature 166 181 - -
Phac8g00896 1549 PRINTS Disease resistance protein signature 241 255 - -
Phac8g00896 1549 CDD LepA 947 1135 - -
Phac8g00896 1549 CDD EF4_II 1143 1227 - -
Phac8g00896 1549 Pfam NB-ARC domain 157 387 IPR002182 GO:0043531
Phac8g00896 1549 Hamap Elongation factor 4 [lepA]. 942 1549 IPR006297 GO:0005525
Phac8g00896 1549 Pfam Elongation factor Tu GTP binding domain 946 1133 IPR000795 GO:0003924|GO:0005525
Phac8g00896 1549 Gene3D - 139 299 IPR027417 -
Phac8g00896 1549 CDD EF4_III 1244 1319 - -
Phac8g00896 1549 Gene3D - 1433 1507 IPR038363 -
Phac8g00896 1549 Gene3D - 944 1137 IPR027417 -
Phac8g00896 1549 FunFam Translation factor GUF1, mitochondrial 1237 1318 - -
Phac8g00896 1549 FunFam Probable disease resistance protein At1g61300 128 293 - -
Phac8g00896 1549 FunFam Translation factor GUF1, mitochondrial 1138 1236 - -
Phac8g00896 1549 Pfam Elongation factor G C-terminus 1354 1439 IPR000640 -
Phac8g00896 1549 CDD lepA_C 1354 1433 IPR035654 -
Phac8g00896 1549 FunFam Elongation factor 4 943 1137 - -
Phac8g00896 1549 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1237 1318 - -
Phac8g00896 1549 Coils Coil 64 91 - -
Phac8g00896 1549 Gene3D Translation factors 1139 1236 - -
Phac8g00896 1549 Pfam Leucine rich repeat 531 587 IPR001611 GO:0005515
Phac8g00896 1549 NCBIfam translation elongation factor 4 945 1548 IPR006297 GO:0005525
Phac8g00896 1549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 401 IPR027417 -
Phac8g00896 1549 FunFam Probable disease resistance protein At1g63360 386 473 - -
Phac8g00896 1549 Pfam GTP-binding protein LepA C-terminus 1441 1547 IPR013842 -
Phac8g00896 1549 SUPERFAMILY Translation proteins 1134 1231 IPR009000 -
Phac8g00896 1549 PANTHER TRANSLATION FACTOR GUF1-RELATED 919 1548 IPR006297 GO:0005525
Phac8g00896 1549 Gene3D - 300 385 IPR042197 -
Phac8g00896 1549 SUPERFAMILY EF-G C-terminal domain-like 1245 1322 IPR035647 -
Phac8g00896 1549 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 944 1136 IPR000795 GO:0003924|GO:0005525
Phac8g00896 1549 NCBIfam small GTP-binding protein domain 949 1124 IPR005225 GO:0005525
Phac8g00896 1549 Gene3D - 1319 1432 - -
Phac8g00896 1549 SUPERFAMILY L domain-like 453 837 - -
Phac8g00896 1549 Coils Coil 22 42 - -
Phac8g00896 1549 Gene3D Ribonuclease Inhibitor 487 840 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00896 Phac-Chr8 5900019 5909248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00896 946 1087 Eukaryotic Initiation Factors Gene Family AT1G56070 41.667 8.01e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00896 K21594 - pvu:PHAVU_008G061300g 1565.82