Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00887 ATGATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTAAAGAAGAAAGGTGGTTTTGATGCTGTCTGTAAGAATAGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTATTTACAGCAAACACTTGAGTACTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATGTGGTTTAGAGGATAGAGTTAAGTTTCACAAGCATTTGATGAAGGCACACACTGAATCCGTGTTGGACGATTCTGGCGGGGAGGAGGCGGGAGATGAACTTGAGAGGAGGGAGTGTGGCTGTCCGGATGGGAGGAAGTTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGTGTCCAATGGGGTTGAACACGAGAGTGCATATGAGTATCTAGGTGGGAGTAAGTCATGTGGTAGTAATAGTATGAAAGACAAAAAATCAGGTCCTATCGGGGATGAATTTGATAATGTATGTGACTATCTAGAGGAGAGGAAGTTGTGCGGTACAAATAGGGTGAACGGGGTGAATCCAGATTCCAATGCGGCCAAGAAAGTTAGGAGGTCAGGACTTCGACTTGTTGATTTGGACATGCTGGAGGACCATGAGACGGGTGAGCCTATTATAGTAAAATTTTGCGGATTTAATACTGAAATGGATATACTAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAGAGCAGCAATAAAGATAACGATGACGGTAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAGAGAAATTTGGTCACAAGAGGAAGAGAGAATCTATGTCAGAATTGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGATTCCTGAGAAGTCCAAGTGGAAGTCATGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTGAAGAAAGATTTCGAGACAGTCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTTCATGTATGATGATCGCGCTGGGGCATTGTACAATTTTAGACAGAGGTTGAAATGTGATGAGAGGTCTTTATTGGTAAAATCTACATCTGATGGAGTCGTCTCCTCTTCTTCGTCTAGAACAAGAACACGTGGAGGTTTGGAGAGAACCCGGAGTGCTCGAGCTGAAGATCGGGTGGACAAAAAGTTACTCGAATCGTGTACTGCACTCTCGAGTCTTGATAAATGTGCTCGAGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAAAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACAGAAATATGGCCTCCAAAAGTTGTAAATTCTAGATGGTGTATTGTTGAAAGGGACCCCATTGGAAAAGGAAGGCAGGATTCATGTGGGTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCACGTTGCTGAGAAAAGGTCTAAAGTTAAAATGGAACTGGGTGAGGCTTTTTTCCAATGGAATTTAGACAAGGTAGGTGAAGAAGTTAGGAGTTCTTGGACAGATCAAGATGAGAAGAAGTTCAAGGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCAGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTGTTTGGACATCATACACCAAAATCACGCAGCCTCACCTTGTTATCACCCAAAAAATCCACAGGCAAAAGGGAAAATAGCAAGTGA 1968 0.4268 MMGNGEPLDLYKLFMVVKKKGGFDAVCKNRLWDLVGEEYGLGVKVGSSVELIYSKHLSTLETCLKNVAGGKFAECGLEDRVKFHKHLMKAHTESVLDDSGGEEAGDELERRECGCPDGRKFSGSNRVKCVKPVSNGVEHESAYEYLGGSKSCGSNSMKDKKSGPIGDEFDNVCDYLEERKLCGTNRVNGVNPDSNAAKKVRRSGLRLVDLDMLEDHETGEPIIVKFCGFNTEMDILEEFDESKLLTVDASDAESDMLRLSDGSKSSNKDNDDGSDEVLILDPSSVDKEKFGHKRKRESMSELLIWINSIAKNPCDPAVGSIPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETVSEQLSWQSQKMHPFMYDDRAGALYNFRQRLKCDERSLLVKSTSDGVVSSSSSRTRTRGGLERTRSARAEDRVDKKLLESCTALSSLDKCARVHIPVGPNHQAEVPKWTGMTCESDSKWLGTEIWPPKVVNSRWCIVERDPIGKGRQDSCGCPVQGSVECVRFHVAEKRSKVKMELGEAFFQWNLDKVGEEVRSSWTDQDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHHTPKSRSLTLLSPKKSTGKRENSK* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00887 655 SMART bright_3 2 66 IPR001606 GO:0003677
Phac8g00887 655 Gene3D - 1 70 IPR036431 GO:0003677
Phac8g00887 655 CDD ARID 4 61 - -
Phac8g00887 655 CDD SANT 549 597 IPR001005 -
Phac8g00887 655 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Phac8g00887 655 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 648 - -
Phac8g00887 655 MobiDBLite consensus disorder prediction 402 422 - -
Phac8g00887 655 MobiDBLite consensus disorder prediction 608 655 - -
Phac8g00887 655 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Phac8g00887 655 MobiDBLite consensus disorder prediction 258 278 - -
Phac8g00887 655 MobiDBLite consensus disorder prediction 609 628 - -
Phac8g00887 655 SUPERFAMILY ARID-like 4 71 IPR036431 GO:0003677
Phac8g00887 655 SMART ELM2_2 449 501 IPR000949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00887 Phac-Chr8 5832590 5837168 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac8g00887 ARID 6.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00887 - - vun:114182925 1105.12