Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00883 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGACACTTTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAATTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCACTCCAACATCTCCAAGGAAGCAAGGACTATCAAAACCAAATGAAAGTAAAGTATTATCGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTCGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTATGGCTTTTTGCATTAGTTCTTGAAAAACCTCATCTTAGACTTGCTTCCATGATGCATGTCTGGAAATGCATGAGTTTGGAAAAATAA 633 0.4044 MGGCCCSARKPNLQGAPVYYYCPPTFEERESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETISSFETLITREDVEESNCKAQTNSTPTSPRKQGLSKPNESKVLSMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQVWLFALVLEKPHLRLASMMHVWKCMSLEK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00883 210 CDD RING-H2_AIRP1-like 135 182 - -
Phac8g00883 210 Pfam Ring finger domain 138 179 IPR001841 -
Phac8g00883 210 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Phac8g00883 210 MobiDBLite consensus disorder prediction 102 129 - -
Phac8g00883 210 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Phac8g00883 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 186 IPR013083 -
Phac8g00883 210 MobiDBLite consensus disorder prediction 106 127 - -
Phac8g00883 210 SMART ring_2 139 179 IPR001841 -
Phac8g00883 210 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 183 - -
Phac8g00883 210 SUPERFAMILY RING/U-box 133 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00883 Phac-Chr8 5789147 5793143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00883 1 185 C3H Transcription Factor Family AT4G00335 55.914 2.24e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00883 - - gmx:100803758 332.798