Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00882 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGACACTTTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAATTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCACTCCAACATCTCCAAGGAAGCAAGGACTATCAAAACCAAATGAAAGTAAAGTATTATCGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTCGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 558 0.4086 MGGCCCSARKPNLQGAPVYYYCPPTFEERESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETISSFETLITREDVEESNCKAQTNSTPTSPRKQGLSKPNESKVLSMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00882 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 184 - -
Phac8g00882 185 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Phac8g00882 185 MobiDBLite consensus disorder prediction 102 129 - -
Phac8g00882 185 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Phac8g00882 185 Pfam Ring finger domain 138 179 IPR001841 -
Phac8g00882 185 SUPERFAMILY RING/U-box 133 183 - -
Phac8g00882 185 MobiDBLite consensus disorder prediction 106 127 - -
Phac8g00882 185 SMART ring_2 139 179 IPR001841 -
Phac8g00882 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 184 IPR013083 -
Phac8g00882 185 CDD RING-H2_AIRP1-like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00882 Phac-Chr8 5789147 5793143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00882 1 185 C3H Transcription Factor Family AT4G00335 56.452 1.38e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00882 - - gmx:100803758 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g00882 8 5789147 5793143 Phac8g00882 8 5789147 5793143 ECH
Phac8g00882 8 5789147 5793143 Phac10g01264 10 35057758 35060991 PCT