Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00878 ATGGGATTTCCGGTAGGGTATCCGGAAGTGCTGGTCCCCAAGCTCTTCCTCAACGCGCTCTCGCTCCTCGCGTGGCTCCGCTCGCTCGTCGCCGCGCTCTTCCGCCTCCTCCGCCTCTCCGACCTCCTCGACACCGACGCCGCCGCGCTCGCCTGGCCGCCGGAGTCCCCGCCGCAGCGCGCCCCTACTCTCTCCGCAGTCCTCATCCGCGAGTTTCTCCCCGTGGCAGCGTTCCGTGACCTCGACGGCGCCGGCGACTCCCCTCCATCGCCGACGGGATGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGGTGCATGGCGAACTGCAAACACATGTTCCACCGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCTCTGTGTAGAACACCGTTCGTCCCCGAGCACAAGGTGGAGGAGTATAACCAACGACTATGGGCAGCTTCTGGTGTTTCGCAGTTTTACCAAGACGATTACACTCCTTCCCTCTGA 516 0.6395 MGFPVGYPEVLVPKLFLNALSLLAWLRSLVAALFRLLRLSDLLDTDAAALAWPPESPPQRAPTLSAVLIREFLPVAAFRDLDGAGDSPPSPTGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPSL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00878 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Phac8g00878 171 SUPERFAMILY RING/U-box 84 146 - -
Phac8g00878 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 157 - -
Phac8g00878 171 SMART ring_2 94 136 IPR001841 -
Phac8g00878 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Phac8g00878 171 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00878 Phac-Chr8 5759334 5760527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00878 1 158 C3H Transcription Factor Family AT1G63840 44.654 1.69e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00878 K16281 - gmx:100813224 253.447