Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00871 ATGGCGATGGAGAGAGAGAGAGAGTTGGGAAATGAGTCGAACGAGTCGACTCGGTCAGAGGAGGAGTATGACCCGGTGGCGGAGGTGCAGCGAGTCATCGAATCGGTGGTTCAGTTCGGGGACTACCGGAGGACGCAACGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCGATCTTGGAAGAGCTTCGCGACCTCCCACAACCCTTTCCGAAGATCGGCGTCGATTGGTTAGTTAAATTCAAGGACGCGCTTTTGTTCGCCAAGGATTTGTTGAAATTGTGCAGCCAAGGAAGCAAGATTCACCTCTCTCTGGAGACCGAAGGGATAATGGTCAACTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCATTTGATGGCGTGCCTTGTGATGAATTGGGTATCTCGGATGAAGTCAAAGAGCAGCTTGACCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTAGTGTTCTCTGAGGAGGATGATAGAAATTCTGACAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTTCATAGTGTTGAGGATCTTAACATAGAAACAATGGCCATTAGGAACCTTGCAGCAGAAAGAAAAGGGCAACAGATTGAGAGTACTAAGCGAATAATTGAACTTCTTAACAAATTCAAACGCATTGCAGGCATGGAAGAAACCAGTGTCCTTGATGATCCTGTCGCACCAAAGATGCTAGAGAGGTGCACCTCTTTGGTCATCCCTCACGAGTTTCTCTGCCCAATAACTCTAGAAATCATGACAGATCCTGTTATCATAGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCGAACGAACCACAACACATGCCCAAAGACTAGGCAACCTTTGCAGCACATGTCATTGGCACCAAACTGCGCATTGAGAAGCTTGATTGAAGAATGGTGTGTGAACAACAAGTTCAAGCTTCCTAAAAAGTACGATTCAGCTCAAGAAAGTAGTTCCGTAGACAGCAAAGAGGAAATTCCAGCTTTGGTTGAGAGCTTAGGGTCCATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGCATGCTGTCAAAGGAAAATGCTGAGAACAGGGTTTTGGTTGCTGAACATGGAGGAATACCACCACTGGTGCAACTACTCTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTGAACTTATCAATTGATGAGGGTAACAAGAGACTTATATCGAAAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGATAATGGTAGTTGTGTGGCGAAGGAAAACTCAGCAGCAACTTTGTTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGATGGCCCCTTTGGTGAATTTGTTGAAGAATGGAACAGTTAGAGGGAAGAAAGATGCTATCACAGCTCTTTTTAACTTATCTCTGAACCATGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTGACACCCTTGCTTCAATTGCTGAAGAACGTAAACTTAGGCATGATTGATGAAGCTCTCTCCATTCTCTTACTCCTTGTAACAAATTCAGAAGGAAGACATGAGATTGGACAACTTACTTTCATTGAAACCCTTGTTGAGTTCATGCGAGAAGGGACTCCCAAGAACAAGGAATGTGCAGCATCAGTTCTTCTTGAGTTGTGCTCAAATAACTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAACATTTAATGGAAATCAAACAAAGTGGAACAAATAGAGCACAGAGGAAAGCAATGGCAATCTTAGAGCTCATAGTCAAGAGCGAGCAAATTTAA 1914 0.441 MAMERERELGNESNESTRSEEEYDPVAEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILEELRDLPQPFPKIGVDWLVKFKDALLFAKDLLKLCSQGSKIHLSLETEGIMVNFQKVYEKLSQAFDGVPCDELGISDEVKEQLDLMHVQLRRARRRTDTQDIELAMDMMVVFSEEDDRNSDSAIIERLAKKLELHSVEDLNIETMAIRNLAAERKGQQIESTKRIIELLNKFKRIAGMEETSVLDDPVAPKMLERCTSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFRTNHNTCPKTRQPLQHMSLAPNCALRSLIEEWCVNNKFKLPKKYDSAQESSSVDSKEEIPALVESLGSIHLEEQRKAVEKIRMLSKENAENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISKEGAIPAIIEVLDNGSCVAKENSAATLFSLSMLDEIKEIVGQSNGMAPLVNLLKNGTVRGKKDAITALFNLSLNHANKGRAIRAGIVTPLLQLLKNVNLGMIDEALSILLLLVTNSEGRHEIGQLTFIETLVEFMREGTPKNKECAASVLLELCSNNSSFTLAALQFGVYEHLMEIKQSGTNRAQRKAMAILELIVKSEQI* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00871 637 FunFam RING-type E3 ubiquitin transferase 265 336 - -
Phac8g00871 637 Pfam Armadillo/beta-catenin-like repeat 471 508 IPR000225 GO:0005515
Phac8g00871 637 Pfam Armadillo/beta-catenin-like repeat 387 426 IPR000225 GO:0005515
Phac8g00871 637 SUPERFAMILY ARM repeat 357 632 IPR016024 -
Phac8g00871 637 Gene3D - 21 133 IPR036537 GO:0007166
Phac8g00871 637 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Phac8g00871 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 339 IPR013083 -
Phac8g00871 637 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Phac8g00871 637 SMART arm_5 551 591 IPR000225 GO:0005515
Phac8g00871 637 SMART arm_5 428 468 IPR000225 GO:0005515
Phac8g00871 637 SMART arm_5 387 427 IPR000225 GO:0005515
Phac8g00871 637 SMART arm_5 510 550 IPR000225 GO:0005515
Phac8g00871 637 SMART arm_5 469 509 IPR000225 GO:0005515
Phac8g00871 637 PANTHER U BOX DOMAIN-CONTAINING 47 631 - -
Phac8g00871 637 FunFam RING-type E3 ubiquitin transferase 22 135 - -
Phac8g00871 637 CDD RING-Ubox_PUB 266 318 IPR045210 -
Phac8g00871 637 Gene3D - 457 635 IPR011989 -
Phac8g00871 637 Gene3D - 340 456 IPR011989 -
Phac8g00871 637 SUPERFAMILY RING/U-box 264 341 - -
Phac8g00871 637 FunFam RING-type E3 ubiquitin transferase 342 637 - -
Phac8g00871 637 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Phac8g00871 637 MobiDBLite consensus disorder prediction 1 25 - -
Phac8g00871 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00871 Phac-Chr8 5672668 5675847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00871 26 637 U-box Gene Family AT5G42340 62.582 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00871 - - gmx:100777362 1062.37