Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00830 ATGTCGTTGTCTCCTTCTCCCTCTGTCGTCTACAACGGGCCACCCATGAACTCCAACAGCACTGGATTGGACATATTCACCAAGATCTTCCTATTGATCCTCTTTCTGTCTCTCTTCGTTCGTGTGTGTTACGTGTACATGACCCTGCGACGTGACCAAGGTGGCAACGACAACATAAGCGACAGCATCGCATCCATGATCCATAACGATCAAAACAATAACCTCACAGGGCTACCCGTTGATGTCGTGAAGTCCTACCACACTTTCCCTTACAGCAAAACCAACAGTGTGGCTACAATGTGCGACCATGATTCCACCTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGCTGAGGATGATGCCGCAATGCCGCCACTACTTTCACCGAGATTGCGTTGACGCCTGGTTGAAGGTCAATGCCACGTGTCCCGTTTGTAGGAACTCGCTCAAGGAAGCTAGAAGCAATAATGATAACAATATTAATAACAATGGTGGCAATGCCTTTGAACGTGTTTAA 525 0.4762 MSLSPSPSVVYNGPPMNSNSTGLDIFTKIFLLILFLSLFVRVCYVYMTLRRDQGGNDNISDSIASMIHNDQNNNLTGLPVDVVKSYHTFPYSKTNSVATMCDHDSTCAICIEDYEESEMLRMMPQCRHYFHRDCVDAWLKVNATCPVCRNSLKEARSNNDNNINNNGGNAFERV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00830 174 PANTHER RING-H2 FINGER PROTEIN ATL67 19 151 IPR044289 GO:0016567|GO:0016740
Phac8g00830 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 155 IPR013083 -
Phac8g00830 174 Pfam Ring finger domain 106 149 IPR001841 -
Phac8g00830 174 SMART ring_2 107 148 IPR001841 -
Phac8g00830 174 CDD RING-H2_EL5-like 107 149 - -
Phac8g00830 174 SUPERFAMILY RING/U-box 100 160 - -
Phac8g00830 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00830 Phac-Chr8 5383497 5384056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00830 22 156 C3H Transcription Factor Family AT5G07040 33.333 1.25e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00830 - - vun:114182932 254.218