Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00729 ATGGAGGATTCATTGGAGAATTGGATTTCCAATTTGGAAATGGAAGACTATGATGCTGTGTTGAGTGAGAGCAATGGTTCATTTGATGAGCAACAGTTCCTAAGAGAGATCCTTGAGGAGCCACAAAATTTGTCACCTCAAGGAGAGAATCTCAGTCCCACCAACAGCAGTGTGTCCTTTGATGAGCCAATTGGTGACACTCTCCACAAAAGCTACAGTTCCAACTCCATCAAGTCCCTGAAAACATTGCCACCATCATCACACACCACATACCTTCTCTCTTTTGATACTTCATCTGCTGAACCAATCATTCCTCATAAGCTTTCCCCAAAGCTTGGCTCATCACTGCAGGGATCTTCCAGCAAAAGGGGTGCTGTAGTGAAAGATGGAGCTGATGAATTTGAACCATTCATGGATCAGCCAAGAAAGAGGGTCAGAAGGCCCTCTGAGACACAACATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTGACAGGGAGCATCATAGCACTTTCAGCAACCATTCCTGGACTCAAAAGGATGGACAAGGCTTATGTACTTCGTGAAGCTGTGAATTACACAAGGCAACTTCAAGAGAGAGTAAAAGAGTTGGAAAATCAAAACAATGACACAAGAGTAGTGCATCATTCATCAACATTGGTAAGGAAATCTCAAGCCTCCTCAAATAAAAACAGCAGCAATGTTAGTGAAAGCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTTCTTGATGAGGAAGTACTCATTAGAATCCATTGTGAGAAGCAAAAGGACATAATCTGCAACATACTTGTCTTGCTTGAAAAGCTCCATCTTTCTCCAACCAGTAGCAGCGTGTTACCGTTTGGCACTTCTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAGCACAGATGAGCTAGTGAAGAATCTGAGAGAATATCTTTTGGATGTGTATGACATGCAACAGTGA 996 0.4247 MEDSLENWISNLEMEDYDAVLSESNGSFDEQQFLREILEEPQNLSPQGENLSPTNSSVSFDEPIGDTLHKSYSSNSIKSLKTLPPSSHTTYLLSFDTSSAEPIIPHKLSPKLGSSLQGSSSKRGAVVKDGADEFEPFMDQPRKRVRRPSETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENQNNDTRVVHHSSTLVRKSQASSNKNSSNVSESNKESLFEVEARVLDEEVLIRIHCEKQKDIICNILVLLEKLHLSPTSSSVLPFGTSTLIIHIIAQMDEECRMSTDELVKNLREYLLDVYDMQQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00729 331 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Phac8g00729 331 PANTHER BHLH TRANSCRIPTION FACTOR 23 324 - -
Phac8g00729 331 MobiDBLite consensus disorder prediction 43 63 - -
Phac8g00729 331 Coils Coil 188 215 - -
Phac8g00729 331 Gene3D - 141 214 IPR036638 GO:0046983
Phac8g00729 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 217 IPR036638 GO:0046983
Phac8g00729 331 SMART finulus 155 204 IPR011598 GO:0046983
Phac8g00729 331 MobiDBLite consensus disorder prediction 42 63 - -
Phac8g00729 331 MobiDBLite consensus disorder prediction 207 239 - -
Phac8g00729 331 MobiDBLite consensus disorder prediction 212 239 - -
Phac8g00729 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00729 Phac-Chr8 4712306 4715231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00729 8 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.207 1.19e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g00729 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00729 - - gmx:100818334 380.948