Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00728 ATGGAGGATTCATTGGAGAATTGGATTTCCAATTTGTTGTCACAGGAAATGGAAGACTATGATGCTGTGTTGAGTGAGAGCAATGGTTCATTTGATGAGCAACAGTTCCTAAGAGAGATCCTTGAGGAGCCACAAAATTTGTCACCTCAAGGAGAGAATCTCAGTCCCACCAACAGCAGTGTGTCCTTTGATGAGCCAATTGGTGACACTCTCCACAAAAGCTACAGTTCCAACTCCATCAAGTCCCTGAAAACATTGCCACCATCATCACACACCACATACCTTCTCTCTTTTGATACTTCATCTGCTGAACCAATCATTCCTCATAAGCTTTCCCCAAAGCTTGGCTCATCACTGCAGGGATCTTCCAGCAAAAGGGGTGCTGTAGTGAAAGATGGAGCTGATGAATTTGAACCATTCATGGATCAGCCAAGAAAGAGGGTCAGAAGGCCCTCTGAGACACAACATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTGACAGGGAGCATCATAGCACTTTCAGCAACCATTCCTGGACTCAAAAGGATGGACAAGGCTTATGTACTTCGTGAAGCTGTGAATTACACAAGGCAACTTCAAGAGAGAGTAAAAGAGTTGGAAAATCAAAACAATGACACAAGAGTAGTGCATCATTCATCAACATTGGTAAGGAAATCTCAAGCCTCCTCAAATAAAAACAGCAGCAATGTTAGTGAAAGCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTTCTTGATGAGGAAGTACTCATTAGAATCCATTGTGAGAAGCAAAAGGACATAATCTGCAACATACTTGTCTTGCTTGAAAAGCTCCATCTTTCTCCAACCAGTAGCAGCGTGTTACCGTTTGGCACTTCTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAGCACAGATGAGCTAGTGAAGAATCTGAGAGAATATCTTTTGGATGTGTATGACATGCAACAGTGA 1005 0.4249 MEDSLENWISNLLSQEMEDYDAVLSESNGSFDEQQFLREILEEPQNLSPQGENLSPTNSSVSFDEPIGDTLHKSYSSNSIKSLKTLPPSSHTTYLLSFDTSSAEPIIPHKLSPKLGSSLQGSSSKRGAVVKDGADEFEPFMDQPRKRVRRPSETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENQNNDTRVVHHSSTLVRKSQASSNKNSSNVSESNKESLFEVEARVLDEEVLIRIHCEKQKDIICNILVLLEKLHLSPTSSSVLPFGTSTLIIHIIAQMDEECRMSTDELVKNLREYLLDVYDMQQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00728 334 Coils Coil 191 218 - -
Phac8g00728 334 Gene3D - 144 217 IPR036638 GO:0046983
Phac8g00728 334 SMART finulus 158 207 IPR011598 GO:0046983
Phac8g00728 334 MobiDBLite consensus disorder prediction 215 242 - -
Phac8g00728 334 PANTHER BHLH TRANSCRIPTION FACTOR 3 327 - -
Phac8g00728 334 MobiDBLite consensus disorder prediction 208 242 - -
Phac8g00728 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 220 IPR036638 GO:0046983
Phac8g00728 334 MobiDBLite consensus disorder prediction 37 66 - -
Phac8g00728 334 MobiDBLite consensus disorder prediction 46 66 - -
Phac8g00728 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Phac8g00728 334 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00728 Phac-Chr8 4712306 4715231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00728 111 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.986 1.52e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g00728 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00728 - - gmx:100818334 375.555