Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00701 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCGGCGAAGAGGGCATTGAGAGGATCCTCGAAGGCTGCACTTGAGAACCAGCGTGAGCCTGAAACTGCGGAAGTGGGGGAGAAAAATCATGCACAAAATTCTGCTGTTGATGTTGGAGTGGAAGAGAAACACGTTGATGTGGACCAAGAGCCTACGGAAGCTCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTTTAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAACCAGAGGAGTATGGGGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAACTAGAGGAAGAACCTGACGAGATAATAGGTGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGAGAACATGCTGGTGAGGAGCATGAGCATGTGCAGGTGCCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTCGAGCAAGCGAAAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGTAAACAGTGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACCTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACTAGTGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGTGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTCGGAACATGCCAGCTGCTCGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGAGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCAAGGCCTCTTTCGAAACCTCTTCAGAGAGGCCGTGGGAAACATAATAATCATGGGGACTTTCGTCCTGGTCGCAATTCTGGAAGATTGCCAAGGCCTTCACGGAGTCGACCCACTCCACGTAGTTATCCTCCTGCCCGTGTGGTTAGAGGCATTGGAAATCGTGCTCCACCAGTTAGACCTGTTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGCCAGGCCAGTTGCTCCTCCAGCTAGAACCTATGACAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTACAGTCGACGTGAGGATCTACCGCCCCCAAGAGGTAGAGTTGCTGCAGATTATGGGCCTAGGGTAGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGATTCTGACTACCCTGAGCTACATAGAAGTACATCTCGTGCTGCTCCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCATCCTCCTCCCCATCTAAGTTATCGAGAAGGACGCCCCCGTGATTATGAAACCATAGTTGGCTCAAAACGTCCTTATAGTGCTATAGATGATGTTCCTCAACGGTATGATACCGGTGCCCGCCAATCAAGATCTCGTTTAGATTATGAATATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAAGTTCGATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGGCAGGGCATGAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAATTATAGTGGTGATTATGTATCGCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCAGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGAGGTGGCTCTGGGTCTTATTATTGA 2325 0.4516 MPPRVVKRGAAKRALRGSSKAALENQREPETAEVGEKNHAQNSAVDVGVEEKHVDVDQEPTEAPNGSAKVENNEEEVKESLDEYEKGEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQDEADELEEEPDEIIGEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHVQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTSEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHNNHGDFRPGRNSGRLPRPSRSRPTPRSYPPARVVRGIGNRAPPVRPVSVRSRRPVTSMLERARPVAPPARTYDRRLTAPAYSKSGMKRDYSRREDLPPPRGRVAADYGPRVASQRHTSYRDYPARDSDYPELHRSTSRAAPKRGYVDDGYGQRFERHPPPHLSYREGRPRDYETIVGSKRPYSAIDDVPQRYDTGARQSRSRLDYEYGGSASQYGDAYGDRLGRSSLGYSGSRSSISNQELHGTYGSRQGMSYGGGSFGGSDGGMYTSNYSGDYVSRGSDVGGRSYSSMYSGRGVGGGSSSYMGGGGSGSYY* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00701 774 Coils Coil 109 129 - -
Phac8g00701 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 355 IPR000504 GO:0003723
Phac8g00701 774 MobiDBLite consensus disorder prediction 1 143 - -
Phac8g00701 774 FunFam RNA recognition water-stress protein1 358 483 - -
Phac8g00701 774 Gene3D - 272 354 IPR012677 -
Phac8g00701 774 MobiDBLite consensus disorder prediction 161 178 - -
Phac8g00701 774 SUPERFAMILY RNA-binding domain, RBD 186 269 IPR035979 GO:0003676
Phac8g00701 774 MobiDBLite consensus disorder prediction 69 94 - -
Phac8g00701 774 MobiDBLite consensus disorder prediction 155 178 - -
Phac8g00701 774 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 39 774 - -
Phac8g00701 774 Gene3D - 360 480 IPR012677 -
Phac8g00701 774 MobiDBLite consensus disorder prediction 434 514 - -
Phac8g00701 774 CDD RRM_SF 370 425 - -
Phac8g00701 774 CDD RRM_SF 193 264 - -
Phac8g00701 774 MobiDBLite consensus disorder prediction 548 562 - -
Phac8g00701 774 SUPERFAMILY RNA-binding domain, RBD 270 427 IPR035979 GO:0003676
Phac8g00701 774 MobiDBLite consensus disorder prediction 581 603 - -
Phac8g00701 774 MobiDBLite consensus disorder prediction 744 774 - -
Phac8g00701 774 SMART rrm1_1 369 444 IPR000504 GO:0003723
Phac8g00701 774 SMART rrm1_1 192 265 IPR000504 GO:0003723
Phac8g00701 774 SMART rrm1_1 272 351 IPR000504 GO:0003723
Phac8g00701 774 FunFam Heterogeneous nuclear ribonucleoprotein Q 272 354 - -
Phac8g00701 774 Gene3D - 106 271 IPR012677 -
Phac8g00701 774 Coils Coil 67 87 - -
Phac8g00701 774 MobiDBLite consensus disorder prediction 95 143 - -
Phac8g00701 774 MobiDBLite consensus disorder prediction 546 629 - -
Phac8g00701 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Phac8g00701 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 450 IPR000504 GO:0003723
Phac8g00701 774 MobiDBLite consensus disorder prediction 610 629 - -
Phac8g00701 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 339 IPR000504 GO:0003723
Phac8g00701 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Phac8g00701 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 427 IPR000504 GO:0003723
Phac8g00701 774 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 125 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00701 Phac-Chr8 4553793 4560345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00701 186 454 Eukaryotic Initiation Factors Gene Family AT1G49760 23.856 2.29e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00701 - - gmx:100811387 1088.56