Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00645 ATGAATCGTAGGAGGAAGGTGGCCAGGAAAAGCAAAGGGAATGTAGTGCAATCTAGTTCCCCTGAAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTATCATGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGAGGTCTCTTGGTAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTTCGTTCGCACAGGTTTGATGCTGGCATGGCTGCATCACTTGCTCCCAGGTGTGTGCATCTGCAGAAGCTCAGGTTTCGGGGGGCGGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTTCTGATGCAACTCTTTCAGTGATTGTGGCTCGGCATGAGTTACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGCCCTAACTTGAATAAGCTTAGACTCTCGGGCATCAGAGATGTAAATGCTGATGCTATTAATACTTTGGCTAAACATTGTTCTAAGTTGACTGATATTGGGTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTGGCGGGGACATCAAGTATGAAGTGGGGAGTGGTTTCCCATCTTTGGCATAAAATTCCTAACCTAATTGGGTTAGATGTTTCAAGAACTGATATTGGTCCATCAGCTGTTTTCAGAATGTTATCCTTATCACAGAATTTGAGGGTTTTGATTGCTCTGAATTGTCCTGTCCTTGAAGAAGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATGTTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAGAATGTGTTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGACCTTAATGAAATTATACCGTGGCTTGAGTGGATGCTATCCCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTGGCAAAATCTTGGAGGGAAGGGCTTCAATCTGAGGCGGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAAGGTGGGATAGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAGCTGGTGGCTGAAGAGGCTGCCGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCGGCTGGTGCATTGGCTAATTTGGCAGCTGACGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCACGTGCATTGGCTAACTTAGCAGCTCATGGAGATAGTAACAGTAACAATGCTGCCGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCATGAGGGCGTCAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAAAAATCGAGAAGCCATTGCCGCATCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTGTGGGGATTGTCAGTTTCGGAAATTAATAGGTGA 1995 0.4551 MNRRRKVARKSKGNVVQSSSPEVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDAGMAASLAPRCVHLQKLRFRGAESADAIIHLRAKNLRELSGDYCRKISDATLSVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPNLNKLRLSGIRDVNADAINTLAKHCSKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKIPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVLIALNCPVLEEDTSFSASKYKNKLLVSLRTDVFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDKNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSEINR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00645 664 Gene3D Ribonuclease Inhibitor 19 301 IPR032675 -
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 408 442 IPR000225 GO:0005515
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 578 614 IPR000225 GO:0005515
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 616 658 IPR000225 GO:0005515
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 486 528 IPR000225 GO:0005515
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 449 483 IPR000225 GO:0005515
Phac8g00645 664 Pfam Armadillo/beta-catenin-like repeat 539 570 IPR000225 GO:0005515
Phac8g00645 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 616 659 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 485 528 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 575 615 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 529 570 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 403 443 IPR000225 GO:0005515
Phac8g00645 664 SMART arm_5 444 484 IPR000225 GO:0005515
Phac8g00645 664 Pfam F-box-like 26 72 IPR001810 GO:0005515
Phac8g00645 664 Gene3D - 490 576 IPR011989 -
Phac8g00645 664 Gene3D - 368 489 IPR011989 -
Phac8g00645 664 SUPERFAMILY ARM repeat 368 659 IPR016024 -
Phac8g00645 664 FunFam Protein ARABIDILLO 2 341 488 - -
Phac8g00645 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 541 IPR000225 GO:0005515
Phac8g00645 664 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Phac8g00645 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 664 IPR000225 GO:0005515
Phac8g00645 664 SMART fbox_2 29 69 IPR001810 GO:0005515
Phac8g00645 664 Gene3D - 577 664 IPR011989 -
Phac8g00645 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Phac8g00645 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515
Phac8g00645 664 PANTHER PROTEIN ARABIDILLO 1 11 663 - -
Phac8g00645 664 SUPERFAMILY RNI-like 24 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00645 Phac-Chr8 4176713 4188087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00645 350 654 U-box Gene Family AT2G23140 30.392 9.26e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00645 - - gmx:100819086 1202.58