Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00638 ATGGCTGAAAAAGATGATGGGGTTGGGTTGAGTTTGAGTCTGAGTTTGGGAGTGAATCAACAACCTTTGAAGGTGAATCACATGCAGCATCCTCAACACCAACAACAACCCCAACCTGGTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATAGGAGCTCCGATGTGATACGAGGAATTGAAGTGAAATCGACGGCGTACTGCGAGGAAGACAACGGCATTTCCTCGCCGAACAGCGTGGTTTCTAGCATTAGCGGCAGCAAGCGGAATGAGAGGGACGATGATAATGCTGCGATGGTGGCCGGAGAGAGAACCTCGTGCTCGCGGGGGAGCGATGATGACGATGGCGGCGGTGGTGGAGACGGCGATGGCGGAAGAAAGAAACTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACGCTCAATCCGAAACGAAAGCAAACTTTAGCAGAGGAGTTGAATCTGAAGCCTAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACTAAGTTGAAGCAAACTGAAGTGGATTGTGAATTCTTGAAGAAATGCTGTGAGAGTCTAACTGAAGATAATAGAAGGTTGCAGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGAACATGAACCCTCCCACCACTCTCACAATGTGCCCCTCTTGTGAGCGTGGTCACTCCTCTTCATCCTCCTCTCCTGCCACCGTCCAATCGTCAGCACCGACTACTCGGAAACTGTTTGGGGCAAACATCCGGCGGCCGGTGGCGGTGAACACTTGGCCATTTGATGGCTCAATTCCTCGGCAATAA 873 0.4937 MAEKDDGVGLSLSLSLGVNQQPLKVNHMQHPQHQQQPQPGPINHNKTLFADLFQLPDRSSDVIRGIEVKSTAYCEEDNGISSPNSVVSSISGSKRNERDDDNAAMVAGERTSCSRGSDDDDGGGGGDGDGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTEDNRRLQKEVQELRALKSSPQMYMNMNPPTTLTMCPSCERGHSSSSSSPATVQSSAPTTRKLFGANIRRPVAVNTWPFDGSIPRQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00638 290 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Phac8g00638 290 Coils Coil 194 221 - -
Phac8g00638 290 MobiDBLite consensus disorder prediction 242 266 - -
Phac8g00638 290 MobiDBLite consensus disorder prediction 76 133 - -
Phac8g00638 290 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Phac8g00638 290 MobiDBLite consensus disorder prediction 242 269 - -
Phac8g00638 290 FunFam Homeobox-leucine zipper protein 18 117 193 - -
Phac8g00638 290 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Phac8g00638 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 261 - -
Phac8g00638 290 CDD homeodomain 132 189 IPR001356 GO:0003677
Phac8g00638 290 SMART HOX_1 130 192 IPR001356 GO:0003677
Phac8g00638 290 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Phac8g00638 290 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Phac8g00638 290 MobiDBLite consensus disorder prediction 76 92 - -
Phac8g00638 290 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Phac8g00638 290 MobiDBLite consensus disorder prediction 21 45 - -
Phac8g00638 290 MobiDBLite consensus disorder prediction 113 133 - -
Phac8g00638 290 SUPERFAMILY Homeodomain-like 114 189 IPR009057 -
Phac8g00638 290 MobiDBLite consensus disorder prediction 21 43 - -
Phac8g00638 290 Gene3D - 117 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00638 Phac-Chr8 4096520 4099759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00638 26 245 Homeobox Transcription Factor Family AT3G60390 57.377 6.93e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac8g00638 HD-ZIP_N 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00638 K09338 - gmx:100819624 378.252