Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00612 ATGGTAGGAAGTTCAAGCAAGGTTAGCATTATTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGGTGGCATTGGTGAGTTTGACGACTTTCTCAAAGGACAAGCTCTTGAGGCCCATGAAATCGCTCTCGAATCCTACGTGCCTGACCCTGTAAACATGACTGACGAGCTTAATGAAAATGTTCACGGGGCTTTGACGGAGGTGTTCAAGGAGGAATCAAACCACACAAGGAGGGAACTGAAGCAGAAATACGGTGGACCATGCTTGGCCCTAAACCCTATCGATCGTTGTTGGAGGTGCAAGAAAGGCTGGGCCAAAAACCGTTTTAAGTTAGCCCATTGCGCCAAGGGTTTTGGAAGAAAGGCCACCGGAGGACTCGAAGGCAAAATGTACATTGTCAACGATCCCTCTGACAATGATCCCATAAACCCTAAACCCGGAACCTTAAGGTTCGGTGTTCTCCAAAAGGAGCCTCTGTGGATCATATTTGCACGAAGCATGATCATCAAGTTGAATTACGAGTTGTTGATTTGTTCTGACAAAACCATCGACGGTCGCGGGGCTAATGTGATGATCAGGGATGGTGCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAGATTACAAAATATCAAGTCCACGCCAGGTGGCACGATTAGGGACTCTTGGAACCATGTAGGAATAAGAACCAAGGCTGATGGGGATGCCATCTCCATTTTTGGCTCTTCAAACATTTGGATCGATCATCTTTCACTCTCTGATTGTGAGGATGGTCTCGTGGACGTTATCCAGGGTTCCACTGCAATCACCATCTCAAATTGTCACATGACCAAACATAACGATGTGATGTTATTTGGAGCCAGCGACACCTACACAGGGGACAAGATAATGCAGGTGACGGTGGCATTCAACCATTTCGGGCAGGGTCTGATTCAGAGAATGCCCCGATGCAGATGGGGTTTCTTCCACGTGTTGAATAACGATTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGCGCCGACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGGAAGTGACGCACAGGGACTATGCAGAACCTTCTGTGTGGGAAAAATGGCAATGGAGATCAGAGAACGATGTGTTCATGAATGGGGCTGTCTTTGTTCAGTCAGGGCCACCTCTTGGGAAGCTTCCATTCAACAAAGGGTTCCTCATGAAACCTAGACATGGCTCACAGGCCAACAGGCTAACACGCTTTGCCGGAGCCCTCAATTGCAAGGCAAATAGCCCTTGCTAG 1335 0.4801 MVGSSSKVSIIILVAFAITIPCLEGGIGEFDDFLKGQALEAHEIALESYVPDPVNMTDELNENVHGALTEVFKEESNHTRRELKQKYGGPCLALNPIDRCWRCKKGWAKNRFKLAHCAKGFGRKATGGLEGKMYIVNDPSDNDPINPKPGTLRFGVLQKEPLWIIFARSMIIKLNYELLICSDKTIDGRGANVMIRDGAGLTMQFVNNVIIHGLRLQNIKSTPGGTIRDSWNHVGIRTKADGDAISIFGSSNIWIDHLSLSDCEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDTYTGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNNDAAKEVTHRDYAEPSVWEKWQWRSENDVFMNGAVFVQSGPPLGKLPFNKGFLMKPRHGSQANRLTRFAGALNCKANSPC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00612 444 SMART amb_all 169 366 IPR002022 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Phac8g00612 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Phac8g00612 444 PANTHER PECTATE LYASE 18-RELATED 42 442 IPR045032 GO:0030570
Phac8g00612 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Phac8g00612 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Phac8g00612 444 Pfam Pectate lyase 180 360 IPR002022 -
Phac8g00612 444 Gene3D - 94 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00612 Phac-Chr8 3917341 3919375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00612 10 444 Polysaccharide Lyase AT5G15110 52.586 2.59e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00612 K01728 - gmx:100780236 742.265