Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00589 ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCGTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCCAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4588 MSSRRSRQHSGSTRISDDQIIELVSKLRQLVREIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00589 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Phac8g00589 92 FunFam Transcription factor ILI6 5 87 - -
Phac8g00589 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 77 IPR036638 GO:0046983
Phac8g00589 92 Coils Coil 55 75 - -
Phac8g00589 92 CDD bHLH_AtPRE_like 10 75 - -
Phac8g00589 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Phac8g00589 92 Gene3D - 4 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00589 Phac-Chr8 3763612 3765975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00589 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 5.47e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g00589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00589 - - gmx:100796852 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g00589 8 3763612 3765975 Phac8g00589 8 3763612 3765975 ECH