Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00584 ATGCAAAGAGTGATTTTGAGAACACAGCCCCCTCGAGAGTGCCCTAGCAATAACATGGTGACGATTGTGAGGAATGTTCAACATGGAGAGTGTCAGAGGAATCACGCAGTTCATGTTGGAGGATTAGCTCAGGATGGTTGCATGGAGTTCATTCCAAGTGGAGGAGAAGGAACTGCTGAAGCTATGATTTGTGCTGCATGTGGTTGCCACAGGAACTACCATAGGAGGGAGATCCACATCCAAGTTATTTGTCACTGCCCTTCTCGAAATGGATAG 276 0.471 MQRVILRTQPPRECPSNNMVTIVRNVQHGECQRNHAVHVGGLAQDGCMEFIPSGGEGTAEAMICAACGCHRNYHRREIHIQVICHCPSRNG* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00584 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 79 - -
Phac8g00584 91 Pfam ZF-HD protein dimerisation region 26 78 IPR006456 -
Phac8g00584 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 28 77 IPR006456 -
Phac8g00584 91 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00584 Phac-Chr8 3687410 3688188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00584 22 88 Zinc finger-homeobox gene family AT3G28917 61.765 1.38e-25 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phac8g00584 ZF-HD_dimer 4.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00584 - - pvu:PHAVU_008G041400g 182.57