LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g00580	ATGGAAGGTAACACCCAAAACACGTTTACCTTCGTCACCAACACCATCGACGTTCCAAGCCCAAGCACCCCCGCGATATCACCCTCCCGTGGTTCTCTTTCACTACTAGCACAGACTTACCCTCCTGGCTTTTCCAGAAAGGTGTTTGCGGAGGTTATAGGAACTTATCTTTTGGTGTTCGTGGGAAGTGGTTCTGCTGGTCTTAGTGTTATTGATGAGAGCAGAGTGTCAAAGCTTGCAGCTTCACTGGCAGCGGGGCTCATAGTCACAGTGTTGATTTACTCAATTGGACACATTTCTGGGGCACACATGAATCCTGCGGTTTCCCTTGCTTTTGCTGCGGTTAGGCATTTTCCGTGGCCACAGCTCCCGTTTTACGTGGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTTTTCCAGCCATCAAATGAAATTGGAGGAACATCACCTGCTGGATCACATATTCAAGCACTAATCATGGAAATGGTGACAACTTTCACCATGGTGTTCATTTCCATGGCCGTCGCCACTGACACAAACGCTACAGGACAACTATCAGGAGTAGCAGTAGGTTGTTCCGTTTCCATATCAAGCATTGTTGCCGGGTAA	627	0.4833	MEGNTQNTFTFVTNTIDVPSPSTPAISPSRGSLSLLAQTYPPGFSRKVFAEVIGTYLLVFVGSGSAGLSVIDESRVSKLAASLAAGLIVTVLIYSIGHISGAHMNPAVSLAFAAVRHFPWPQLPFYVAAQLTGAISASYTLRELFQPSNEIGGTSPAGSHIQALIMEMVTTFTMVFISMAVATDTNATGQLSGVAVGCSVSISSIVAG*	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g00580	208	PRINTS	Major intrinsic protein family signature	166	184	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac8g00580	208	PRINTS	Major intrinsic protein family signature	85	109	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac8g00580	208	PRINTS	Major intrinsic protein family signature	122	141	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac8g00580	208	PRINTS	Major intrinsic protein family signature	46	65	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac8g00580	208	SUPERFAMILY	Aquaporin-like	40	207	IPR023271	-
	Phac8g00580	208	Gene3D	Glycerol uptake facilitator protein.	30	208	IPR023271	-
	Phac8g00580	208	Pfam	Major intrinsic protein	44	207	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac8g00580	208	ProSitePatterns	MIP family signature.	103	111	IPR022357	-
	Phac8g00580	208	PANTHER	AQUAPORIN NIP2-1	38	208	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g00580	Phac-Chr8	3616071	3620677	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g00580	45	208	Major Intrinsic Protein MIP	AT5G37820	45.455	3.73e-44	148

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g00580	K09874		-	gmx:100788071	327.405