Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00538 ATGAATAAGGAAAGGAACATTATCATGGAAGGAACATTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAAGTGAAGATGACCTTCTGAGAGAGTGCGTTCAACTCTACGGGGAAGGAAAATGGCACCTTGTTCCTGGAAGAGCAGGGTTGAACAGATGCCGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTGGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCTCTCATTGCTGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAAAACCAACATGCGCCGCAAAGTACACTCTCACAACAAAGATGACAAGAACAACAACAACGTAAAAGAATCCGAAACAAGTTGGAAACCCCACCAAGTGATAAAGCCTGTCCCTCGAGCTTTGCGAAAAGCATCGCCCTTGGTGCAGGGAAAAGTGATGAGTAGTTCGAAAGTTGGTGTAAGTGAAGGAGTTTCATCAGGGTGTGAGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAAGAGAACATTGCAGTTGACAACATGATGTGGTTCCCTGGTGCCAAAGATGGAGCGTTTGAGCTTTGGGATGAAGAACTTGGTTCTGTTGCTTCTGACTTTCTTGCAGAAGCTCAAACATTGACCGATTTTCTTCTTAGTTAA 717 0.4324 MNKERNIIMEGTLSGVRKGAWSQSEDDLLRECVQLYGEGKWHLVPGRAGLNRCRKSCRLRWLNYLKPNIKRGDFGEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWKTNMRRKVHSHNKDDKNNNNVKESETSWKPHQVIKPVPRALRKASPLVQGKVMSSSKVGVSEGVSSGCENWWETLLDEKEENIAVDNMMWFPGAKDGAFELWDEELGSVASDFLAEAQTLTDFLLS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00538 238 CDD SANT 76 116 IPR001005 -
Phac8g00538 238 CDD SANT 20 65 IPR001005 -
Phac8g00538 238 MobiDBLite consensus disorder prediction 118 139 - -
Phac8g00538 238 FunFam Transcription factor MYB113 73 145 - -
Phac8g00538 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Phac8g00538 238 SMART sant 70 118 IPR001005 -
Phac8g00538 238 SMART sant 17 67 IPR001005 -
Phac8g00538 238 Gene3D - 73 144 - -
Phac8g00538 238 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Phac8g00538 238 MobiDBLite consensus disorder prediction 120 134 - -
Phac8g00538 238 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Phac8g00538 238 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 138 - -
Phac8g00538 238 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Phac8g00538 238 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Phac8g00538 238 Gene3D - 18 70 - -
Phac8g00538 238 FunFam Myb transcription factor 18 70 - -
Phac8g00538 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Phac8g00538 238 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00538 Phac-Chr8 3421979 3423233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00538 15 153 MYB Transcription Factor Family AT1G66370 62.411 3.83e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac8g00538 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00538 - K09422 pvu:PHAVU_008G038600g 424.091