Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00536 ATGGAGGGAGCCATGGAAGAATTATCAGGTGTGAGAAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTCAAAGCATGCGTTCATCTTTACGGGGAAGGAAAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTAAAACCAAATATCAAGCGAGGAGATTTTAGTGAAGATGAAATTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGGTGGTCTCTGATTGCAGGAAGACTTCCAGGAAGAACTTCAAATGATGTGAAGAATTACTGGAACAGCTACACACGACGCAAATTACACTCTCACAACAAAGATTACAAAGTAAGGGAATCAACATTGAAACCCCATGAAGTTATAAAGCCTGTACCTCAAGCTTTGTCAAAAACTTGCCCCGAGTTACTGCAAGGCAACGTTATAAATAGTTTGAAAGTTGGTGTTAGTGAACAAGGTGTAACTTCTTCCTCAAATTGGTGGGAAACTCTTTTAGATGAAAAGGGAGAGAATAATATTACAGTGAACAATACATGCTTCTTTGGAGAGGAAGATGGAGTGTTTGAACTATGCAATCAAGAACTTACTTCAATTGATTCTCACTTTCTTACAGAAGCAGAAACTTGGAGCGATATGTTTCTTGACCTAGGAGTTAATTAG 699 0.3863 MEGAMEELSGVRKGAWSKFEDELLKACVHLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNSYTRRKLHSHNKDYKVRESTLKPHEVIKPVPQALSKTCPELLQGNVINSLKVGVSEQGVTSSSNWWETLLDEKGENNITVNNTCFFGEEDGVFELCNQELTSIDSHFLTEAETWSDMFLDLGVN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00536 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Phac8g00536 232 SMART sant 12 62 IPR001005 -
Phac8g00536 232 SMART sant 65 113 IPR001005 -
Phac8g00536 232 FunFam Myb transcription factor 13 65 - -
Phac8g00536 232 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Phac8g00536 232 CDD SANT 69 110 IPR001005 -
Phac8g00536 232 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Phac8g00536 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Phac8g00536 232 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Phac8g00536 232 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Phac8g00536 232 Gene3D - 13 65 - -
Phac8g00536 232 CDD SANT 15 60 IPR001005 -
Phac8g00536 232 Gene3D - 68 135 - -
Phac8g00536 232 FunFam Transcription factor MYB113 68 139 - -
Phac8g00536 232 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Phac8g00536 232 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00536 Phac-Chr8 3396963 3398706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00536 6 143 MYB Transcription Factor Family AT1G66370 58.219 1.30e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac8g00536 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00536 - K16166 pvu:PHAVU_008G038400g 357.836