Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00514 ATGTCAACCTCGAGCCAGCACCAGTTCCGATACACTCAGACCCCCTCGAAGGTGCTGCACCTTCGCAACCTCCCCTGGGAATGCTCCGAGGAGGAGCTCAGAGAGCTCTGCAAGCCCTTCGGTAAGATCGTCAACACCAAATGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTTGAATTCGTAGATCTTAATCAAGCCATTTCAATGGTTTCGTATTATGCTTCATCTTCAGAACCTGCTATGGTTCGTGGCAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGTCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGGGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCGGCTTTCGGCTTTGTTCACAAAATTGCAACTTTTGAAAAGACTGCAGGTTTCCAGGCTCTGATTCAGTTCACTGATGCTGAAACTGCTTCTGCTGCTAGGGAGGCACTGGATGGAAGAAGCATACCAAGATACCTGCTACCAGCCCATGTTGGTTCTTGTAATTTGCGTATATCATACTCAGCTCATAAAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGGACTACACAAATCCTATGCTTCCTGTTAACTATACTGCTATTGAGGGGACAGTACAGACGGCTATAGGCCCTGATGGGAAGAGGAAAGAACCTGAAAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACCGTTGATGTCCTCCATACAGTCTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATGTCATGACGGCGGCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTACACAGTGCCAGATCCTAGCCTGGTTGCAGCTCAAGGTCCTGCAACAGCTTGGCAAAATCCACAGGCTGCGCCAATGTACCATGGTAGTGCTCCTGCTTATCACACTCAAGTTCCGGGTGGGCAATGGGATCCATCTCTGCAGGCGGTTAGACCCAGTTACGTATCTGCACCTGGTACTTTTGCAGCTTCCTCACCTCTTGCAAGCAGCCCCATTGGTCATAATGCAAATCCAACGGGAATCGCTCAGTCTGGGGTCCCACGCAATGTAAATTTACAGCCCAGTGGTTCCTCACCTCTCGTGCAGACCACCCAAGCTGCTCAAGGATTGGTTCAGCCAAATGCAAGACCTGGTGCTGCTTCACCTCCTGCTCAACATTATTATGCTTAG 1398 0.4649 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASAAREALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGTVQTAIGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVMTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLVAAQGPATAWQNPQAAPMYHGSAPAYHTQVPGGQWDPSLQAVRPSYVSAPGTFAASSPLASSPIGHNANPTGIAQSGVPRNVNLQPSGSSPLVQTTQAAQGLVQPNARPGAASPPAQHYYA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00514 465 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Phac8g00514 465 SMART rrm1_1 18 91 IPR000504 GO:0003723
Phac8g00514 465 SMART rrm1_1 246 316 IPR000504 GO:0003723
Phac8g00514 465 SMART rrm1_1 113 185 IPR000504 GO:0003723
Phac8g00514 465 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Phac8g00514 465 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 4 259 - -
Phac8g00514 465 FunFam Polypyrimidine tract-binding protein-like 2 110 220 - -
Phac8g00514 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Phac8g00514 465 Gene3D - 241 344 IPR012677 -
Phac8g00514 465 Gene3D - 109 220 IPR012677 -
Phac8g00514 465 FunFam Polypyrimidine tract-binding protein homolog 2 4 109 - -
Phac8g00514 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Phac8g00514 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Phac8g00514 465 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Phac8g00514 465 Pfam RRM-like domain 242 320 IPR021790 -
Phac8g00514 465 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Phac8g00514 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Phac8g00514 465 Gene3D - 2 108 IPR012677 -
Phac8g00514 465 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
Phac8g00514 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 196 IPR000504 GO:0003723
Phac8g00514 465 MobiDBLite consensus disorder prediction 401 442 - -
Phac8g00514 465 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Phac8g00514 465 FunFam Polypyrimidine tract-binding protein-like 2 241 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00514 Phac-Chr8 3193403 3199224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00514 10 206 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 4.52e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00514 K14948 - gmx:100792308 865.144