Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac8g00514 | ATGTCAACCTCGAGCCAGCACCAGTTCCGATACACTCAGACCCCCTCGAAGGTGCTGCACCTTCGCAACCTCCCCTGGGAATGCTCCGAGGAGGAGCTCAGAGAGCTCTGCAAGCCCTTCGGTAAGATCGTCAACACCAAATGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTTGAATTCGTAGATCTTAATCAAGCCATTTCAATGGTTTCGTATTATGCTTCATCTTCAGAACCTGCTATGGTTCGTGGCAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGTCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGGGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCGGCTTTCGGCTTTGTTCACAAAATTGCAACTTTTGAAAAGACTGCAGGTTTCCAGGCTCTGATTCAGTTCACTGATGCTGAAACTGCTTCTGCTGCTAGGGAGGCACTGGATGGAAGAAGCATACCAAGATACCTGCTACCAGCCCATGTTGGTTCTTGTAATTTGCGTATATCATACTCAGCTCATAAAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGGACTACACAAATCCTATGCTTCCTGTTAACTATACTGCTATTGAGGGGACAGTACAGACGGCTATAGGCCCTGATGGGAAGAGGAAAGAACCTGAAAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACCGTTGATGTCCTCCATACAGTCTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATGTCATGACGGCGGCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTACACAGTGCCAGATCCTAGCCTGGTTGCAGCTCAAGGTCCTGCAACAGCTTGGCAAAATCCACAGGCTGCGCCAATGTACCATGGTAGTGCTCCTGCTTATCACACTCAAGTTCCGGGTGGGCAATGGGATCCATCTCTGCAGGCGGTTAGACCCAGTTACGTATCTGCACCTGGTACTTTTGCAGCTTCCTCACCTCTTGCAAGCAGCCCCATTGGTCATAATGCAAATCCAACGGGAATCGCTCAGTCTGGGGTCCCACGCAATGTAAATTTACAGCCCAGTGGTTCCTCACCTCTCGTGCAGACCACCCAAGCTGCTCAAGGATTGGTTCAGCCAAATGCAAGACCTGGTGCTGCTTCACCTCCTGCTCAACATTATTATGCTTAG | 1398 | 0.4649 | MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASAAREALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGTVQTAIGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVMTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLVAAQGPATAWQNPQAAPMYHGSAPAYHTQVPGGQWDPSLQAVRPSYVSAPGTFAASSPLASSPIGHNANPTGIAQSGVPRNVNLQPSGSSPLVQTTQAAQGLVQPNARPGAASPPAQHYYA* | 466 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac8g00514 | 465 | CDD | RRM2_PTBPH1_PTBPH2 | 109 | 203 | IPR034793 | - | |
Phac8g00514 | 465 | SMART | rrm1_1 | 18 | 91 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | SMART | rrm1_1 | 246 | 316 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 106 | IPR035979 | GO:0003676 | |
Phac8g00514 | 465 | PANTHER | MATRIN 3/NUCLEAR PROTEIN 220-RELATED | 4 | 259 | - | - | |
Phac8g00514 | 465 | FunFam | Polypyrimidine tract-binding protein-like 2 | 110 | 220 | - | - | |
Phac8g00514 | 465 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 175 | - | - | |
Phac8g00514 | 465 | Gene3D | - | 241 | 344 | IPR012677 | - | |
Phac8g00514 | 465 | Gene3D | - | 109 | 220 | IPR012677 | - | |
Phac8g00514 | 465 | FunFam | Polypyrimidine tract-binding protein homolog 2 | 4 | 109 | - | - | |
Phac8g00514 | 465 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 70 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 242 | 322 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | CDD | RRM3_PTBPH1_PTBPH2 | 242 | 338 | IPR034794 | - | |
Phac8g00514 | 465 | Pfam | RRM-like domain | 242 | 320 | IPR021790 | - | |
Phac8g00514 | 465 | SUPERFAMILY | RNA-binding domain, RBD | 112 | 209 | IPR035979 | GO:0003676 | |
Phac8g00514 | 465 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 17 | 95 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | Gene3D | - | 2 | 108 | IPR012677 | - | |
Phac8g00514 | 465 | SUPERFAMILY | RNA-binding domain, RBD | 248 | 342 | IPR035979 | GO:0003676 | |
Phac8g00514 | 465 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 196 | IPR000504 | GO:0003723 | |
Phac8g00514 | 465 | MobiDBLite | consensus disorder prediction | 401 | 442 | - | - | |
Phac8g00514 | 465 | CDD | RRM1_PTBPH1_PTBPH2 | 15 | 95 | IPR034792 | - | |
Phac8g00514 | 465 | FunFam | Polypyrimidine tract-binding protein-like 2 | 241 | 346 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac8g00514 | Phac-Chr8 | 3193403 | 3199224 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac8g00514 | 10 | 206 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 25.000 | 4.52e-06 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac8g00514 | K14948 | - | gmx:100792308 | 865.144 |