Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00482 ATGTTCATGGCTTGTTCTAACAGTTTGCTTCCTTTGGCCCTTTTAATGGTTCTCTGTGTTCCAGCCTTGTCATATGACAGTACATGGCAGAGTGCCCATGCAACTTTCTATGGTGACATGCAAGGTGGAGACACCATGCAGGGAGCTTGTGGTTATGGTGATCTCTTCAAGCAAGGTTACGGGCTTGAAACCGCAGCCCTAAGCACAGCACTATTCAACAATGGTCTGAGTTGTGGTGCATGTTTTGAGATAAAGTGTGTGGACGACCCTCAATGGTGCATTCCAAATGCAGGCTCAATCAAAGTGACTGCAACAAATTTCTGTCCTCCCAATTACTCCTCACCAAATTTTGACCATTGGTGCAACCCTCCACAGAAACACTTTGACTTGTCCATGAGTATGTTCACCACCATTGCCGAGTACAAAGCTGGGATCATCCCAGTGAAGTATCGTCGTGTGCCATGCTCCAAAACTGGGGGTCTCAAGTTCCAAACTGCTGGGAACCCTTATTGGCTTCAAGTTTTGCTGTACAACGTTGGCGATGGTGGTGATGTTTGTCAGGTGAACATCAAAGGTTCCAACACCAATGGGTGGACATCCATGTCTAGGGTTTGGGGACAGAATTGGGTCACTGGAGAGAACTTGGTGGGGCAATCCTTGTCCTTTCAGGTGAGTACCAGTGATGGAAGAGTGTTGGAGTTTGATGAGGCTATACCTTCCAATTGGCAATTTGGGCAGAGCTATGAGGCCAACACAAATTTTTAG 765 0.4693 MFMACSNSLLPLALLMVLCVPALSYDSTWQSAHATFYGDMQGGDTMQGACGYGDLFKQGYGLETAALSTALFNNGLSCGACFEIKCVDDPQWCIPNAGSIKVTATNFCPPNYSSPNFDHWCNPPQKHFDLSMSMFTTIAEYKAGIIPVKYRRVPCSKTGGLKFQTAGNPYWLQVLLYNVGDGGDVCQVNIKGSNTNGWTSMSRVWGQNWVTGENLVGQSLSFQVSTSDGRVLEFDEAIPSNWQFGQSYEANTNF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00482 254 CDD DPBB_EXPA_N 29 155 - -
Phac8g00482 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Phac8g00482 254 SMART dpbb_1 64 150 IPR007112 -
Phac8g00482 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Phac8g00482 254 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Phac8g00482 254 SUPERFAMILY Barwin-like endoglucanases 17 178 IPR036908 -
Phac8g00482 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Phac8g00482 254 Gene3D - 18 156 IPR036908 -
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Phac8g00482 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Phac8g00482 254 PANTHER EXPANSIN-A15 12 251 IPR002963 GO:0009664
Phac8g00482 254 Gene3D - 160 254 IPR036749 -
Phac8g00482 254 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Phac8g00482 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 160 IPR007112 -
Phac8g00482 254 Pfam Lytic transglycolase 64 150 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00482 Phac-Chr8 2985591 2987755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00482 21 254 Expansin Gene Family AT5G39300 62.393 1.04e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00482 - - gsj:114422475 422.165