Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00472 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAGTTCTGCTGTCAAGCACATGAATCAAGATTTTTCTGTATCTAGCCCCTCACTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTAGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCTTTTGCTCGCTATGGAGAAGTACTTGATGCCAAGGTTATTATGGATCGTGAAACTGGCAGGTCCAGAGGTTTTGCCTTCATAACCTATGCAACAAGTGAGGATGCATCTGCTGCCGTTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACCGAAAGGTCACGCCCAGGGTTTGGTGGTGGTGGTGGTGGCGGCTATGGTGGTGGCAGTGGCTATGGTGGTGGTGGCTATGGGAGCAGCGGTGGTGGTTATGGTAGAGGTGATAGTTATGGAAGTAATAACAGGGGTGGAAGCTATGGAAGTGGTGGTTATGGTGTTACAGGAAGCTATGGCGGTGGCAGTGCTGAAACTAGTTACACTAGTGGTGCTGATGCTAGTAATTACCAATTCGGTGGAAATTCTGGTGGAGATCTTGGCTCAGCTGGTGGTGAATTCGGAAGCCACCAAAATGAAGGAACAGGCGCAGCAGACAATGAGCCATTTGAAGACAATGTGAGGGGGAACAGCGATGAAACTGATGGCTATGCTCAGACCCGCGGGTGA 741 0.4818 MAFLNKIGNLLKSSAVKHMNQDFSVSSPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITYATSEDASAAVQALDGQDLHGRRIRVNYATERSRPGFGGGGGGGYGGGSGYGGGGYGSSGGGYGRGDSYGSNNRGGSYGSGGYGVTGSYGGGSAETSYTSGADASNYQFGGNSGGDLGSAGGEFGSHQNEGTGAADNEPFEDNVRGNSDETDGYAQTRG* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00472 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Phac8g00472 246 SMART rrm1_1 41 114 IPR000504 GO:0003723
Phac8g00472 246 MobiDBLite consensus disorder prediction 194 246 - -
Phac8g00472 246 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 150 - -
Phac8g00472 246 Gene3D - 28 153 IPR012677 -
Phac8g00472 246 PRINTS Eggshell protein signature 126 141 - -
Phac8g00472 246 PRINTS Eggshell protein signature 197 215 - -
Phac8g00472 246 PRINTS Eggshell protein signature 36 52 - -
Phac8g00472 246 PRINTS Eggshell protein signature 156 166 - -
Phac8g00472 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Phac8g00472 246 SUPERFAMILY RNA-binding domain, RBD 23 148 IPR035979 GO:0003676
Phac8g00472 246 CDD RRM2_NsCP33_like 41 116 - -
Phac8g00472 246 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00472 Phac-Chr8 2872674 2876107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00472 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 32.051 6.19e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00472 K12741 - gmx:100818300 287.73