Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00465 ATGGTTTCAAATGATGGCAGTAAAGCAAGTGAAATCTTTCGAGGTCAAGTTCACTTGTACAAACACTTGTTTGCTCATACGATAGATGCTATGAGTCTTAAATGGATGGTTGAGCTTAGCATACCAGACATAATACACAACCATGGTCAACCAATTACATTTCAAAAGTTGGTGTCCATTCTACAAGTTTCACCAACTAAAGTTAGAGGTGTGCAGAGTCTCATACGCTACCTAGCACACACTGGATTCTTTGAGATAGTTAGTATCCATGAGAATATGGAAGAAAAGGAAGCATATGCTCTAACTGCTGCATCACAGCTTCTTGTCAAAGACAGTGACCTTTGTCTAGCACCAATGGTAGAGGGTTTTGTTGACCCAGGTTTAACTGGTGTATGGTCTAACCTCAAGAAGTGGACTTATGAGGATGATCTCACACTATTTGGTGTCTCAGTAGGATCAAATCTGTGGGAATTTCTTGATAAAAATCCTGCATCTGACGAGGCATTCAATGAGACATTGGCCGCTGATTCTAAGATGATGAACATGGCATTGAGAGGTTGCAATTGGGTGTTTGAGGGAGTGGAGTCCATTGTGGATGTTGGCGGTGGAACTGGAATCACAGCCAAGACAATATGTCAGGCGTTTCCTAACATGAAATGCATTGTGTTGGAACGTCCACGTGTTATAGAAAACTTGTCAGGAACCAACAATTTGACATATGTTGGTGGAGACATGTTTAAATCTATTCCAAAGGCTGATGCAGTTCTACTTAAGTCACAGGTAGCTTTCGCACACTCCCTTTATTTCGTGGCCAAACTTTTCCTGTTGTTTGCTTCCTTCTGCACTTCCCGTCACATTCTCACTGTGCCATCATCTTCACAATCACACCCTTCTCCGCGACCACCACATTCCCAGATGGCCTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTCGTGGGTAATGCATTTGTCGAACAATATTACCACATTCTTCACCATTCACCAGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACCAGGAAGGAGTAACTGTGCTGGTGACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTTAATGATGTTTTTAGGTATGTAGAAGATGATGAACCGTCAGAACTGCCTCCAGTTAATGGAGATGGTGATGCAGCTGCTGTTAAATTAACCCCAGAACCAGAATCCAGTCATGTTGCTGATTCTCCTGCCCCAGACTCCACAAATTCTCTTGTGAACAAGGGTCAAATTGTTGTGGAGAAGGCTTATGCTCCATCTAATCATCACGAGAGACAGATACCTGCTGAAAATGAAGACAATGTAGAATCCCATTTTCAGTCAAATGGAAATGATGATTCTCAGGCCACAGAAGTGGCTTCTTTAGCCCAGGAGGATGCTCCAAAGCAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCGGTACCAACTAAAGTTTATGTGCCTACTAATACGCTAAAGTCAGGGTCTAACAAAACTGAGAGCCTGGTAGTTGAGCCAGTAGAATCTAATGAAGTGCCTGAAGCAGCTTTGGACAGTGTTAATGACCCTGAAAGTAGTGATACTCACGAGGAAGTTGAAGGACACTCCATTTATATTCGAAATTTACCTTTAAACGTGACTGTTGGTCAGTTGGAAGTGGAGTTTAAGAAATTTGGATCCATCAAGCCGGACGGCATCCAAGTCAGAAATAACAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCTATGAATAGTGCAATTCAGGCTTCACCTATTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACTCGAGTTGGCAGTGGCATCAGCAATACTGGAAGACCTAGGATCCCACCCGGTAGGGGTGGATTACGAAATGACTCTTTCAGGGGCCGTGGGAACTATGGCGGCGGTCGCGGATACGGTCGAAATGATTATGGAAACCGTGGTGGTGAGTTTTCTGGTAGAGGTCGCAGTCATGGTGATGGTGAGTTTTCTGGTAGAGGTCGCAGTCATGGTGAAAGCTATCACCAAGGAAGAGGGAGAGGTGGCCGGTCAAGCGGACCAAAACAGAATGCCGTTGTTTCGAACTGA 2346 0.4352 MVSNDGSKASEIFRGQVHLYKHLFAHTIDAMSLKWMVELSIPDIIHNHGQPITFQKLVSILQVSPTKVRGVQSLIRYLAHTGFFEIVSIHENMEEKEAYALTAASQLLVKDSDLCLAPMVEGFVDPGLTGVWSNLKKWTYEDDLTLFGVSVGSNLWEFLDKNPASDEAFNETLAADSKMMNMALRGCNWVFEGVESIVDVGGGTGITAKTICQAFPNMKCIVLERPRVIENLSGTNNLTYVGGDMFKSIPKADAVLLKSQVAFAHSLYFVAKLFLLFASFCTSRHILTVPSSSQSHPSPRPPHSQMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYQEGVTVLVTGCLTGKDNMRRKFAQSFFLAPQDNGYFVLNDVFRYVEDDEPSELPPVNGDGDAAAVKLTPEPESSHVADSPAPDSTNSLVNKGQIVVEKAYAPSNHHERQIPAENEDNVESHFQSNGNDDSQATEVASLAQEDAPKQSYASIVKVQKGSSVPTKVYVPTNTLKSGSNKTESLVVEPVESNEVPEAALDSVNDPESSDTHEEVEGHSIYIRNLPLNVTVGQLEVEFKKFGSIKPDGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPIPIGGRQAVVEIKRTTTRVGSGISNTGRPRIPPGRGGLRNDSFRGRGNYGGGRGYGRNDYGNRGGEFSGRGRSHGDGEFSGRGRSHGESYHQGRGRGGRSSGPKQNAVVSN* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00465 781 MobiDBLite consensus disorder prediction 291 315 - -
Phac8g00465 781 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Phac8g00465 781 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Phac8g00465 781 SUPERFAMILY NTF2-like 318 439 IPR032710 -
Phac8g00465 781 FunFam Nuclear transport factor 2 family protein 313 442 - -
Phac8g00465 781 ProSiteProfiles Nuclear transport factor 2 domain profile. 322 438 IPR018222 -
Phac8g00465 781 MobiDBLite consensus disorder prediction 443 481 - -
Phac8g00465 781 CDD RRM_SF 610 681 - -
Phac8g00465 781 Pfam Nuclear transport factor 2 (NTF2) domain 322 438 IPR002075 -
Phac8g00465 781 Pfam O-methyltransferase domain 132 266 IPR001077 GO:0008171
Phac8g00465 781 FunFam Ras GTPase-activating protein-binding protein 1 596 728 - -
Phac8g00465 781 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 318 741 IPR039539 -
Phac8g00465 781 CDD NTF2 318 440 IPR018222 -
Phac8g00465 781 MobiDBLite consensus disorder prediction 511 539 - -
Phac8g00465 781 Gene3D - 2 108 IPR036388 -
Phac8g00465 781 FunFam Coniferyl alcohol 9-O-methyltransferase 2 108 - -
Phac8g00465 781 MobiDBLite consensus disorder prediction 689 781 - -
Phac8g00465 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 610 668 IPR000504 GO:0003723
Phac8g00465 781 MobiDBLite consensus disorder prediction 739 763 - -
Phac8g00465 781 SUPERFAMILY RNA-binding domain, RBD 602 684 IPR035979 GO:0003676
Phac8g00465 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 608 685 IPR000504 GO:0003723
Phac8g00465 781 Gene3D Vaccinia Virus protein VP39 109 270 IPR029063 -
Phac8g00465 781 Gene3D - 589 693 IPR012677 -
Phac8g00465 781 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 258 IPR029063 -
Phac8g00465 781 MobiDBLite consensus disorder prediction 511 531 - -
Phac8g00465 781 Gene3D - 311 443 - -
Phac8g00465 781 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 258 IPR016461 GO:0008168
Phac8g00465 781 SMART rrm1_1 609 681 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00465 Phac-Chr8 2786637 2796928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00465 22 258 Monolignol Biosynthesis Gene Families AT5G54160 27.686 6.15e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00465 K24983 - gmx:100805494 744.962