Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00407 ATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTCTCCAAGAGGAGAACGGGACTTCTCAAGAAAGCTCACGAAATCTCTGTGCTCTGCGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTTAATGGAACCAACAATGATTCGGAGGGCAATTGGTCTTTCGAATATATCAAGCTCAACGCTAAAGTTGAAGTGTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAGCTTGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCACGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGGTACAAACAACATATTCCTCTATTAACACTTCAATCTAA 543 0.4273 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALNGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKVQTTYSSINTSI* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00407 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Phac8g00407 180 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Phac8g00407 180 Coils Coil 123 169 - -
Phac8g00407 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phac8g00407 180 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac8g00407 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac8g00407 180 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g00407 180 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Phac8g00407 180 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00407 Phac-Chr8 2401420 2409959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00407 1 168 MADS-box Gene Family AT1G26310 64.535 9.58e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac8g00407 K-box 8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00407 K09264 - gmx:100786580 280.026