Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00406 ATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTCTCCAAGAGGAGAACGGGACTTCTCAAGAAAGCTCACGAAATCTCTGTGCTCTGCGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTTAATGGAACCAACAATGATTCGGAGGGCAATTGGTCTTTCGAATATATCAAGCTCAACGCTAAAGTTGAAGTGTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAGCTTGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCACGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGATGAAGGAGAAAGAGAAGACATTGACTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACCAACCTCAACTTATGTTCTCCTCAACTATTACCATCACAAAGACTTTTAACTCTCAGTGGGACATTGCAAGGAAGAACAAGGGTGGAGGAAAGGGGAGAAGCTCAAACAGTGCCAACTGCCAATTCACTCATTCCACCATGGATGCTGCACATCTGA 732 0.4413 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALNGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKMKEKEKTLTERPQSVPETLGQNSTNLNLCSPQLLPSQRLLTLSGTLQGRTRVEERGEAQTVPTANSLIPPWMLHI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00406 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 Coils Coil 123 179 - -
Phac8g00406 243 MobiDBLite consensus disorder prediction 167 192 - -
Phac8g00406 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g00406 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phac8g00406 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac8g00406 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Phac8g00406 243 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g00406 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac8g00406 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Phac8g00406 243 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00406 Phac-Chr8 2401420 2409959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00406 1 176 MADS-box Gene Family AT1G26310 63.536 3.32e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac8g00406 K-box 6.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00406 K09264 - gmx:100786580 363.999