Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00379 ATGGCTAGGTCTGCAAAAGGGCATCAACATGAATTGGAGGACGATGAAGAAGAAGAAGAATTTCTAACTGCAAACACCTCTACCTCTCTCAACAAAGTGAAGGTGGACGAACCCAGCACGGGAAAGAGGGTGAATACGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTTTGAGAGATCTCATACCTCAAAATGATCAGAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATCGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAGCAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAATTAATTCCATGGAGAAATCATCACGGGCCTGCAGAAAATCCTACAGATCCTTCTCAAACTATACAAAATGGGTCTGTTGATGAGAAAAATAATAGCTCCTCTCCATTGTTTCCCGGAAATATACCAAACCCTATGGAGTCTGACTTCTCAATGGTGACTGTTCAGAAGGGCCACATCCCTGGTTCATCTACCGATGCGGTTCCCTTGACCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGACAACCCAACATCTTCAAGAATCTGTTTCTAACGTTGACATGCATTCCCATACCCAGCCTCAATTGTGGCTTGATAAATCAAACAAGGGCAACTATATTCTTCCACATGATAGTACAATGAAGGAACAGGAGGAGCTAGTGATTGAATCTGGATCAGATAGCATTTCTAGTGCTTATTCTCAAGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCGGGGGTAGATATGTCCCAAACTAATCTCTCTGTGCAAATTGATGTTGGTAGACGCGCAAATGCTGAGTTGGTCCCCTCTGCATATAGTTCCAAGGTTCATGAAAATCAATTTGCGAGCAACCCAGCAATATCACATTCTGGAGTTGATTACTGCAATATTGAATCCGAACAAAGTTCGAAGAGGCTCAGACAAGAAGCAAGCTAG 1032 0.4244 MARSAKGHQHELEDDEEEEEFLTANTSTSLNKVKVDEPSTGKRVNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPTKLIPWRNHHGPAENPTDPSQTIQNGSVDEKNNSSSPLFPGNIPNPMESDFSMVTVQKGHIPGSSTDAVPLTMQMRLDMFDPVVSSGMTTQHLQESVSNVDMHSHTQPQLWLDKSNKGNYILPHDSTMKEQEELVIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRANAELVPSAYSSKVHENQFASNPAISHSGVDYCNIESEQSSKRLRQEAS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00379 343 SMART finulus 52 102 IPR011598 GO:0046983
Phac8g00379 343 Coils Coil 93 113 - -
Phac8g00379 343 Coils Coil 5 25 - -
Phac8g00379 343 Gene3D - 44 117 IPR036638 GO:0046983
Phac8g00379 343 MobiDBLite consensus disorder prediction 128 160 - -
Phac8g00379 343 FunFam BHLH domain class transcription factor 44 116 - -
Phac8g00379 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Phac8g00379 343 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Phac8g00379 343 CDD bHLH_AtBIM_like 45 121 - -
Phac8g00379 343 MobiDBLite consensus disorder prediction 118 160 - -
Phac8g00379 343 MobiDBLite consensus disorder prediction 36 62 - -
Phac8g00379 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 125 IPR036638 GO:0046983
Phac8g00379 343 MobiDBLite consensus disorder prediction 1 62 - -
Phac8g00379 343 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 340 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00379 Phac-Chr8 2285546 2289504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00379 3 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.122 3.81e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g00379 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00379 - - pvu:PHAVU_008G025500g 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g00379 8 2285546 2289504 Phac8g00379 8 2285546 2289504 ECH