Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00342 ATGTTGGAGGGAGAACCTGCTGGCACGTGGGCGCGCACGTGCGACACGTGCCGCTCCGCACCATCCACCGTCTTCTGCCGCGCCCACAACGCCTACCTCTGCTCCTCCTGCGATGGGCGCGTTCACCACACCTCCTCCTCCTCTTGGCACGAGCGCGTCTGGGTCTGTGAGGCCTGCGAGCGGGCACCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCTCTCTGTTCCTCATGCGACGCCGACATCCACTCCGCCAACCCTCTCGCCAGCCGCCACCACCGCGTACCCATCCTCCCCATAGCTGCCGGCCACCACTCCCACGTCGAAATAGACGTCGCCGACGACGACGATGCTGCTGACGTGGATGACGACGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACTGGCACTGTCCCTAACAGCAACAACAATGGGTTCTTGTACAGTGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGCGGTGACAACAACCACTTCGCTGCAACAACTACCACTACTGCCACTACTGCTGATCATTACACTCAGCACCATCATTTTGATGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTGGTTCCGGTTCAGCAGCACCAGCATTTTCAGCTTGGCTTGGAGTTTGAGAATTCTAAGCCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCAACATTGGATATTGGTGTTGTACCTGAATCACCCATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCGTTCAGATGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTAGACCCCGTATAAAGGGTCGATTCGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1080 0.5287 MLEGEPAGTWARTCDTCRSAPSTVFCRAHNAYLCSSCDGRVHHTSSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDAADVDDDDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTTATTADHYTQHHHFDGVSQKSYAGDSVVPVQQHQHFQLGLEFENSKPAFSYNGSISQSISVSTLDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPVQMMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00342 359 Pfam CCT motif 290 332 IPR010402 GO:0005515
Phac8g00342 359 CDD Bbox1_BBX-like 55 98 - -
Phac8g00342 359 CDD Bbox1_BBX-like 14 55 - -
Phac8g00342 359 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Phac8g00342 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 346 IPR045281 GO:0009909
Phac8g00342 359 SMART bboxneu5 51 98 IPR000315 GO:0008270
Phac8g00342 359 SMART bboxneu5 9 48 IPR000315 GO:0008270
Phac8g00342 359 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Phac8g00342 359 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Phac8g00342 359 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00342 Phac-Chr8 2077343 2080209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00342 3 359 C2C2-CO-like Transcription Factor Family AT3G02380 53.908 2.29e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phac8g00342 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00342 K12135 - gmx:100301886 581.637