Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00340 ATGGGGACGCCAAGAGGAACAACTCTTCTCTTTTACACATTGTTCTTCTTTTGGTGCTCCGCAGATGCTTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCCTTGATGAGCATAAAACAATCTCTGGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACATGTTCTTCAGAAAACTTGGTCGTTGGACTGGGGACTCCAAGTCAAAGTCTATCTGGTACTCTATCTCCGAGCATAGGAAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGTTCAATCCCTTCAGAGCTGGGAAAACTTCCGAAGCTTCAGACCCTTGATCTCTCAAACAACTTCTTCAGAGGGGAGATTCCTCCCTCTCTGGGACACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCTCTGGCTAACATGACCCAGCTTAATTTTCTTGATTTGTCATACAACAATCTTAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCATTCAGCATTGTTGGAAACCCCCTTGTTTGTGCCACGGGAAAAGAGCCAAATTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTAAACAATACCGAACATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTATTGGTTTTGGAGGTGTTATTTGGTGGAGACACAAACACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTAACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTTCCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGGGAGATTCAATTTCAAACCGAAGTTGAAATGATCAGCCTGGCAGTGCACCGAAACCTCCTCAGACTCTATGGATTTTGCATGACAACAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTTCTTCCCGTCTCAAGGGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTATTGTACCTTCATGAGCAATGTGATCCAAAGATAATCCACAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTACTGTGAAGCTGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGACTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCCCCAGAGTACCTCTCCACAGGACAATCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAGTTGATCACAGGCCAGAGGGCTCTAGAGTTTGGAAAATCAGCCAATAACAAAGGAGCCATGCTTGATTGGGTGAGTTTGTTTCCCTTTATTCATCAATACTCCTTCCCTTTATCTCAAACCAAATGGTAA 1611 0.4413 MGTPRGTTLLFYTLFFFWCSADALLSPKGVNFEVQALMSIKQSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVVGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGSIPSELGKLPKLQTLDLSNNFFRGEIPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTEHALQSGRPKTHKMAIAFGLSLGCLCLIVIGFGGVIWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQISTNNFSSKNILGKGGFGNVYKGVLPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVSSRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVSLFPFIHQYSFPLSQTKW* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00340 536 ProSiteProfiles Protein kinase domain profile. 303 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac8g00340 536 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Phac8g00340 536 SUPERFAMILY Protein kinase-like (PK-like) 280 505 IPR011009 -
Phac8g00340 536 Pfam Leucine Rich repeats (2 copies) 97 137 IPR025875 -
Phac8g00340 536 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 506 - -
Phac8g00340 536 FunFam Somatic embryogenesis receptor-like kinase 1 380 524 - -
Phac8g00340 536 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Phac8g00340 536 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Phac8g00340 536 SMART serkin_6 303 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac8g00340 536 SUPERFAMILY L domain-like 33 305 - -
Phac8g00340 536 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Phac8g00340 536 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Phac8g00340 536 SMART LRR_typ_2 120 143 IPR003591 -
Phac8g00340 536 SMART LRR_typ_2 168 191 IPR003591 -
Phac8g00340 536 SMART LRR_typ_2 144 167 IPR003591 -
Phac8g00340 536 SMART LRR_typ_2 96 119 IPR003591 -
Phac8g00340 536 Gene3D Transferase(Phosphotransferase) domain 1 380 527 - -
Phac8g00340 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Phac8g00340 536 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Phac8g00340 536 Pfam Protein kinase domain 304 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00340 Phac-Chr8 2062763 2066599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00340 11 526 Receptor kinase-like Gene Family AT5G16000 78.311 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phac8g00340 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00340 - - gmx:100798412 991.104