Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00295 ATGCAATTTGCCAAGCTCGACGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTCGGGGAGGCCTATGATGGAGACATTGCATTTGCCAGTGCCCTAGAAACTTTTGGTGGTGGACATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCCTAAGGGAAATTGGGACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGCTAAATGACAGGTTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATCTATGACCAGACTCGGGAGAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCACTCGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCTCATCTTCGTTACTTCAAACAGGGGTATGAGTTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTGAATGAAAGAATGCAAGAGTACAAACGACAGATTGATCGGGAGAGTAGGTGGGCATCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCTGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTCTCTAAGCGTTCCTCAAACTTAAGGGGTGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAGCAGTGCAGCAAATCATCTGGGTCGAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCACCATGGTGGAGTACATGATGAAAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCCACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTATTGAAGAATGTGCAGCAGACAGAAGTCTTGCTTCTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATTGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGCGGTGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTGCACCGTAACCTCGGCGTGCACATATCAAAGGTCAGGTCTCTTACTTTAGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTATTACAATCAAGAAGTGCCATTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAACCGCCGATGTTCTTCTTCCCCAAACCTTGTCAATCTGATTCTCTATCAGTGAAGGAAAAGTTCATCCATGCAAAGGTATGA 1899 0.4334 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAIEECAADRSLASAHLERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAIQVDLVPTGLSKSDKPPMFFFPKPCQSDSLSVKEKFIHAKV* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00295 632 SUPERFAMILY ArfGap/RecO-like zinc finger 500 590 IPR037278 -
Phac8g00295 632 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Phac8g00295 632 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Phac8g00295 632 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Phac8g00295 632 Pfam Putative GTPase activating protein for Arf 503 590 IPR001164 GO:0005096
Phac8g00295 632 MobiDBLite consensus disorder prediction 438 461 - -
Phac8g00295 632 CDD ArfGap 503 631 - -
Phac8g00295 632 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Phac8g00295 632 MobiDBLite consensus disorder prediction 253 269 - -
Phac8g00295 632 Pfam PH domain 294 427 IPR001849 -
Phac8g00295 632 PANTHER CENTAURIN/ARF 3 631 IPR045258 GO:0005096
Phac8g00295 632 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Phac8g00295 632 SUPERFAMILY PH domain-like 293 444 - -
Phac8g00295 632 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Phac8g00295 632 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Phac8g00295 632 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Phac8g00295 632 CDD BAR_SFC_plant 14 215 IPR035670 -
Phac8g00295 632 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 632 IPR001164 GO:0005096
Phac8g00295 632 SMART arf_gap_3 500 606 IPR001164 GO:0005096
Phac8g00295 632 MobiDBLite consensus disorder prediction 447 461 - -
Phac8g00295 632 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Phac8g00295 632 Gene3D Arf GTPase activating protein 480 632 IPR038508 -
Phac8g00295 632 MobiDBLite consensus disorder prediction 249 270 - -
Phac8g00295 632 Coils Coil 227 247 - -
Phac8g00295 632 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 632 - -
Phac8g00295 632 CDD PH_ACAP 295 432 - -
Phac8g00295 632 SMART PH_update 293 430 IPR001849 -
Phac8g00295 632 Gene3D - 285 438 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00295 Phac-Chr8 1731616 1742246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00295 512 591 C2H2 Transcription Factor Family AT4G21160 51.852 1.17e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00295 K12489 - gmx:100789134 1162.9