Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00286 ATGACCATGGTTCCTTCTCAAAACGGGAAACATCAGAACATTAATAGGAGTGGTGATTATGTTATTTGCCGTAACACAACAACAACGACTAGTGCTATGAACCAGGTTATTGAAGTTGAAGGAAGCTACAATTGCTTATTAGGATCTGATTTTGTGGTGAGGAGGAACATCATGGCTGAGGCTGAAGAATCATCCAGACAGAACAACGACGACAACAACAACGAGGAAGCTGAACGTGGTCGCTGTGGTTCAACCTCAAAGGATGAAGAAGTAGAAGGAACAAACATCAACATCAACACCAACACCAATAACAACAATAACTGGCTTCAATTAGGCATAGGTTTGACAAGCACAAAGCAAGACCGTGATCGAACCGTTCCAGCAACAACCGGTTCAGGGCCTGTGGAGTTAGACTTGCTTCCCTTGCGGCGGAACTTCGATCAGCCGCCGGCATTTTTTCCGGTGGCGGTTTCCGGTAGAGGAGGGCCTAGTTTTGGTGGTTCTTCTTCTTTGGTTTTTGAGCATCAAACGGCGTCGCCTTCTTCCATGTCCATGTCTATGGCTAGTGGTCCAATTACCTCAGCCTTTGGTCATCAAGAGATGATGAACTGGGCATTTGGTCCACTACTTCCTCCTTCTATGCCTATTATGCCCTCTTCTTCCTCTTTCACTCCTCTTCCACCTCATCATCATCCTCCTTCTTCTTCTTCCTCCTCATCACAAACTTGCCACTCCTCTTTGAGGCCCCCCTTAGGATCCTACTTTCCCACACCCTTTCATCATTTCCCTTCTTCTTCTGGGTTTGATCAATATGACGTGGCTGCGGCAGGACCAAGCTCCGATGTCACCGTTCGAGTTGTTGATCCTCCCAGAAGACCTCATTCTGGAATATGGTTCATGTTACAAGCCTCTCAAAATCAAGGGAAAGAACCATTCTTGCCACAAATACCTAAGAACTACCTTAGAATTAAAGACGGAAGGATGACAGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTGAGACTGGAAAGCGAATCAGAGATAGAGATAAGATGCAGAGGGCAGCAACTTTTACCTTTGTTGACGTTGCAGCATGTGAGGGATAGCATTTGGAGTGGCAGAGACAGCACAAGAGCTTTGCTTTCAGATTCCTCAACCTCATCAGATCATGTCATGGTGCTCCATTATGGTAGAACCACTGCTTAA 1209 0.4582 MTMVPSQNGKHQNINRSGDYVICRNTTTTTSAMNQVIEVEGSYNCLLGSDFVVRRNIMAEAEESSRQNNDDNNNEEAERGRCGSTSKDEEVEGTNININTNTNNNNNWLQLGIGLTSTKQDRDRTVPATTGSGPVELDLLPLRRNFDQPPAFFPVAVSGRGGPSFGGSSSLVFEHQTASPSSMSMSMASGPITSAFGHQEMMNWAFGPLLPPSMPIMPSSSSFTPLPPHHHPPSSSSSSSQTCHSSLRPPLGSYFPTPFHHFPSSSGFDQYDVAAAGPSSDVTVRVVDPPRRPHSGIWFMLQASQNQGKEPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLRLESESEIEIRCRGQQLLPLLTLQHVRDSIWSGRDSTRALLSDSSTSSDHVMVLHYGRTTA* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00286 402 PANTHER RING FINGER PROTEIN 1 400 IPR044171 GO:0007275
Phac8g00286 402 Gene3D - 290 397 - -
Phac8g00286 402 MobiDBLite consensus disorder prediction 89 103 - -
Phac8g00286 402 MobiDBLite consensus disorder prediction 62 88 - -
Phac8g00286 402 MobiDBLite consensus disorder prediction 233 247 - -
Phac8g00286 402 MobiDBLite consensus disorder prediction 220 247 - -
Phac8g00286 402 Coils Coil 58 78 - -
Phac8g00286 402 MobiDBLite consensus disorder prediction 62 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00286 Phac-Chr8 1689695 1698800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00286 310 398 C3H Transcription Factor Family AT3G23060 35.870 3.45e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00286 - - pvu:PHAVU_008G0188001 560.451