Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00257 ATGGATTCTTCTTCTGCTTCGATCTCTCACTTCCGAGTCTCTGCGAATTCGTTCCTCTCTCGATACGAACCGCTTTCTCTGCTTCTCGTTCCTCTCCTCTCTCTCCTCATCGCTCACTCGCTTCGCTCCTTCTTGCGCCGTCTCTCCGAGAAAGGACTCAAAGCCACGCTCCTAGGGTTTATCATGAACGCCGTCAAATTGGTTCCTGGCGTGAAGGGGTACATAGACGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAATCTGATAGCCAATCTAAAAGAGTAGGTTGGAATACTGAGTTGCCAAGCACAGGATTAGGGACGTCTGTCCTTGAGAAAATGAGAGAGGAAAAAAATAATGATCCGGTCTGGCAAGGCAAATGCTCCGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTGTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAAGCAGAGGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAATTAATTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGCACCAGTTGACAAGAATTTTAAAGCGGATGTGAAAGCGATTCGACGCCTTATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTCGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGAATCAATTTGTTGCTGTTACTGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCAGGAAGTCTAATTGCGGGTGCGTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGGTCAAGAAGAATACGGAAAGGCATAGAGGAGATTGCTGAGTTGTTCATTGTTGGAAAACCCGACATGACAATCGTGGCCTTGGGATCTGATGTTCTGGATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCAAATAGCATCCACATCTGTGTTACACTACAACATGTTCCAATTGTTGAAGACTTTCTCAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGGCTAGCACCTATATATGGAGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGATGGTACCTGCTAA 1620 0.4302 MDSSSASISHFRVSANSFLSRYEPLSLLLVPLLSLLIAHSLRSFLRRLSEKGLKATLLGFIMNAVKLVPGVKGYIDAEKQKVVDKLQSDSQSKRVGWNTELPSTGLGTSVLEKMREEKNNDPVWQGKCSGTVYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEINSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRAPVDKNFKADVKAIRRLINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKNQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSRRIRKGIEEIAELFIVGKPDMTIVALGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00257 539 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 443 IPR002129 GO:0016830|GO:0019752|GO:0030170
Phac8g00257 539 Gene3D Aspartate Aminotransferase, domain 1 108 502 IPR015422 GO:0003824
Phac8g00257 539 FunFam Sphingosine-1-phosphate lyase 1 499 538 - -
Phac8g00257 539 Gene3D - 136 403 IPR015421 GO:0003824
Phac8g00257 539 SUPERFAMILY PLP-dependent transferases 78 502 IPR015424 -
Phac8g00257 539 Gene3D - 99 536 - -
Phac8g00257 539 PANTHER - 37 539 - -
Phac8g00257 539 FunFam Sphingosine-1-phosphate lyase 1 390 502 - -
Phac8g00257 539 FunFam sphingosine-1-phosphate lyase 1 139 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00257 Phac-Chr8 1513105 1519754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00257 157 499 Calmodulin-binding Proteins AT3G17760 26.648 1.02e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00257 K01634 - gmx:100794395 975.311