Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00236 ATGAATTCAGAGCTTTTTCTTGCATTTTCATCAATGGCTTCTTCACTCCCTCGGAGAAGAACCCACGCTCCCAAATCCTCCTCCGCCCTAATTGACGACGTTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTCTTCTGCCTCCGCCCCGTCCTCCCTTCCGTCCCCAAAGGCTCCTGGTTCTGCCGCACCTGCTCCAACCACAAGCCTGAGTCTTTCCCCCTCGTGCAGACCAAAATAATTGATTTCTTTCGAATTCAACGCTCCCCCGAGGCATCGTTGAATCAAGATGCGCGGAAGAAGCGAAAGCGAGGTGGGAGCTTGGTGGTGTCGAAGAGGAAACGGAAACTGTTGCCGTTCGTGCCGAGTGAGGACCCAAATAGGAGGTTGGAGCAGATGGCGTCGCTGGCGACGGCGTTGACTGCAACTAGTACTGAGTTCAGCAATAAGCTCACTTACATGCCTGGAATGGCACCGAGGTCTGCTAATTGCCCTGGTCTTGAGCGTGGTGGAATGCAGGTCTTGTCAAAAGAAGACACTGACACCTTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTTGAAGCAGATAGATCCATCAAGGATTTAACCATAATTACAGAATACGTTGGAGATGTAGATTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCAAAGACACTTGTGATCTGTCCAGACAAACGAAGCAATATAGCACGTTTCATTAATGGCATCAATAACCATACACCTGAAGGAAAAAAGAAACAAAACTTAAAATGCGTGAGATTTGACGTTGGAGGCGAATGTCGAGTTCTTTTAGTTTCCAATAGAGATATCACAAAAGGGGAAAGGTTGTATTATGACTACAATGGAGATGAACATGAGTATCCAACTGAACATTTTGTCTGA 1038 0.4663 MNSELFLAFSSMASSLPRRRTHAPKSSSALIDDVFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPVLPSVPKGSWFCRTCSNHKPESFPLVQTKIIDFFRIQRSPEASLNQDARKKRKRGGSLVVSKRKRKLLPFVPSEDPNRRLEQMASLATALTATSTEFSNKLTYMPGMAPRSANCPGLERGGMQVLSKEDTDTLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLVSNRDITKGERLYYDYNGDEHEYPTEHFV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00236 345 ProSitePatterns Zinc finger PHD-type signature. 36 80 IPR019786 -
Phac8g00236 345 FunFam Histone-lysine N-methyltransferase ATXR5 116 345 - -
Phac8g00236 345 CDD PHD_RSF1 36 80 - -
Phac8g00236 345 ProSiteProfiles Zinc finger PHD-type profile. 33 83 IPR019787 -
Phac8g00236 345 SUPERFAMILY SET domain 203 336 IPR046341 -
Phac8g00236 345 Pfam PHD-finger 35 82 IPR019787 -
Phac8g00236 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 90 IPR013083 -
Phac8g00236 345 ProSiteProfiles SET domain profile. 211 333 IPR001214 GO:0005515
Phac8g00236 345 CDD SET_ATXR5_6-like 208 345 - -
Phac8g00236 345 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 109 343 - -
Phac8g00236 345 SMART PHD_3 35 81 IPR001965 -
Phac8g00236 345 SUPERFAMILY FYVE/PHD zinc finger 27 86 IPR011011 -
Phac8g00236 345 Gene3D SET domain 117 345 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00236 Phac-Chr8 1415961 1418492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00236 33 96 C2H2 Transcription Factor Family AT3G01460 31.343 9.07e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac8g00236 PHD 1.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00236 K24406 - gmx:100775247 625.55