Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00235 ATGAATTCAGAGCTTTTTCTTGCATTTTCATCAATGGCTTCTTCACTCCCTCGGAGAAGAACCCACGCTCCCAAATCCTCCTCCGCCCTAATTGACGACGTTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTCTTCTGCCTCCGCCCCGTCCTCCCTTCCGTCCCCAAAGGCTCCTGGTTCTGCCGCACCTGCTCCAACCACAAGCCTGAGTCTTTCCCCCTCGTGCAGACCAAAATAATTGATTTCTTTCGAATTCAACGCTCCCCCGAGGCATCGTTGAATCAAGATGCGCGGAAGAAGCGAAAGCGAGGTGGGAGCTTGGTGGTGTCGAAGAGGAAACGGAAACTGTTGCCGTTCGTGCCGAGTGAGGACCCAAATAGGAGGTTGGAGCAGATGGCGTCGCTGGCGACGGCGTTGACTGCAACTAGTACTGAGTTCAGCAATAAGCTCACTTACATGCCTGGAATGGCACCGAGGTCTGCTAATTGCCCTGGTCTTGAGCGTGGTGGAATGCAGGTCTTGTCAAAAGAAGACACTGACACCTTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTTGAAGCAGATAGATCCATCAAGGATTTAACCATAATTACAGAATACGTTGGAGATGTAGATTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCAAAGACACTTGTGATCTGTCCAGACAAACGAAGCAATATAGCACGTTTCATTAATGGCATCAATAACCATACACCGAAAAAAGAAACAAAACTTAAAATGCGTGAGATTTGA 915 0.4776 MNSELFLAFSSMASSLPRRRTHAPKSSSALIDDVFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPVLPSVPKGSWFCRTCSNHKPESFPLVQTKIIDFFRIQRSPEASLNQDARKKRKRGGSLVVSKRKRKLLPFVPSEDPNRRLEQMASLATALTATSTEFSNKLTYMPGMAPRSANCPGLERGGMQVLSKEDTDTLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPKKETKLKMREI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00235 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 90 IPR013083 -
Phac8g00235 304 ProSitePatterns Zinc finger PHD-type signature. 36 80 IPR019786 -
Phac8g00235 304 SUPERFAMILY FYVE/PHD zinc finger 27 86 IPR011011 -
Phac8g00235 304 SMART PHD_3 35 81 IPR001965 -
Phac8g00235 304 CDD PHD_RSF1 36 80 - -
Phac8g00235 304 Gene3D SET domain 117 304 IPR046341 -
Phac8g00235 304 ProSiteProfiles Zinc finger PHD-type profile. 33 83 IPR019787 -
Phac8g00235 304 SUPERFAMILY SET domain 203 286 IPR046341 -
Phac8g00235 304 PANTHER HISTONE ACETYLTRANSFERASE 32 291 - -
Phac8g00235 304 Pfam PHD-finger 35 82 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00235 Phac-Chr8 1415961 1418492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00235 33 96 C2H2 Transcription Factor Family AT3G01460 31.343 6.37e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac8g00235 PHD 1.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00235 K24406 - gmx:100775247 518.85