Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g00200 ATGGTCGCCGGAATTGACATGTCACTCGACGACATTATGAGGCGCTCTGCCGAGGCGGCGACATCTCGTCGGCGATACTCGTATGTTCGCAGCTCGACCAGAATGACGTCGTATCCCGTCCCGCAGCCAAGGCAACGCGGAATGATTCCAGAAATGGGGTTTGAAGATGACGCTGCCGCTATGATCGAAAGCGGCACTAAAATCTTGATATCTAACTTGGATCATGGAGTTTCAAACGGTGATATCAAGCTGCTTTTCTCGGAAGAGGGTGAATTGAAAAAATACTCCATTAATTACGATCAGAATGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCATGAGGCACTCGGATGCTTTATCAGCCATCAAGAAATACAACAACATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTCGTTGGAACTAGTACTCCTGTTTTTGCTCCTCTTCGTCAAAATAACTTACTGGAAATACCAAATGATTCGCTTCTAAGCAAAGGAGGAAGAGTTGGAGGTAGGGGTTTCCACAGTGATTTTGTACAGGGCCACCTTCCAAGGGGCAGTGAAAAAGAGAAGGGATATAGTCGAAAGTTATATTTTAGAGATCTTGATCATGACTTGGAGAGGTCTCACCGCTTTTCAAGAGGCCACGCAAAAGTAAAGAGCAATAATAGAAAAGTGACTGCTAAAGATCTTGATGATGACTTGGAGAGATATCACCTAGAGGCTAAGCAGATTATAACACAAAATGGAAAGTCAGATAATAGTTGA 774 0.4406 MVAGIDMSLDDIMRRSAEAATSRRRYSYVRSSTRMTSYPVPQPRQRGMIPEMGFEDDAAAMIESGTKILISNLDHGVSNGDIKLLFSEEGELKKYSINYDQNGRSKGTAEVVFMRHSDALSAIKKYNNMRLDGKPLQIELVGTSTPVFAPLRQNNLLEIPNDSLLSKGGRVGGRGFHSDFVQGHLPRGSEKEKGYSRKLYFRDLDHDLERSHRFSRGHAKVKSNNRKVTAKDLDDDLERYHLEAKQIITQNGKSDNS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g00200 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Phac8g00200 257 CDD RRM_THOC4 66 140 - -
Phac8g00200 257 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 243 - -
Phac8g00200 257 Gene3D - 51 199 IPR012677 -
Phac8g00200 257 SUPERFAMILY RNA-binding domain, RBD 24 140 IPR035979 GO:0003676
Phac8g00200 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
Phac8g00200 257 SMART rrm1_1 67 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g00200 Phac-Chr8 1236381 1238317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g00200 61 140 Eukaryotic Initiation Factors Gene Family AT2G36660 27.500 1.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g00200 K12881 - gmx:100785926 325.865