LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g00168	ATGTATTCGAAGTCAAGGCCACGCATCTTGGAGGAGAGGACATGGATACAGAAGTTCAAAAGGAAGAACAACGTTGACATAAATGGGAACCCGAAAGCCTTGAGGAAGTTGAGAACTGCTTGTGAGAAAGCAAAAAGAACGCTCTCATATGCTGTTGACACCACCATTGAGGTAGATGCTTTATCAGGGAGCATTAACTTCTGTTCATCAATCACTCGTGCAAGATTTGAGGAACTCAACTTGGACCTCTTTAAAAGGTGTATGGAGACAGTAGATAGGTGTCTTGTTGATTCTAAGATGGACAAGAGTGATGTAGATGATGTTGTTCTAGTTGGAGGTTCTTTTAGGATTCCCAAAGTGCAGCAGCTATTGCAAGACTACTTCAAGGGAAAGGACCTGTGCATGAGCATCCACCCTGATGAAGCTGTTGCTTATGGAGCAGCAATTCAGGCTGCTTTGCTGACTAAAAGCAACAAGTTAGTTCCCAACTTAGTGCTATTAGATGTTACCCCGCTGTCACTTGGTATATCTTTAAATGGAGATCTAATGAGTGTTGTGATTCCTAGGAACACCACCATTCCTGTTGAGAAAAAGGAAGGTGAAAGGACAAGAGCAAGTGATAACCATTTGCTTGGTTATTTTAATTTTTATGGCACTCCTTATGCTCTTCGAGACCATCCTTTAACTGTAAGTTTCAGTATAGATGCTGATGGTATTCTAACTGTAATTGCTGAGGAAGAAAGCAGTGGAAGTAAGAGCGGGATTACTCTAACCAACAGCAAGGGAAGACTATCAACTCAACAAATTATGAAAATGGTTCAAGATGCCGAGAAATACAAGGCTGAAGACCAGAAGTACCAAAAGAAAGCTGAAGCAATTAATGCTTTGGATGACTTCGTTTACAAGATAGAGAATGCTATAGATGATGTTGATAACAGTAATAAGCTTCATTCACGAGACAAAACCAAGATCAACATGGCAATTGCAGAGGCCAGAAAATTGCTTGATGCCAGGCAGCAGACAGAAACAGAGGTGTTTGTGGATCATCTGAATGAGGTGAAGAGCCTCATTGAACCCATTTTGAGAATTAACTAG	1095	0.41	MYSKSRPRILEERTWIQKFKRKNNVDINGNPKALRKLRTACEKAKRTLSYAVDTTIEVDALSGSINFCSSITRARFEELNLDLFKRCMETVDRCLVDSKMDKSDVDDVVLVGGSFRIPKVQQLLQDYFKGKDLCMSIHPDEAVAYGAAIQAALLTKSNKLVPNLVLLDVTPLSLGISLNGDLMSVVIPRNTTIPVEKKEGERTRASDNHLLGYFNFYGTPYALRDHPLTVSFSIDADGILTVIAEEESSGSKSGITLTNSKGRLSTQQIMKMVQDAEKYKAEDQKYQKKAEAINALDDFVYKIENAIDDVDNSNKLHSRDKTKINMAIAEARKLLDARQQTETEVFVDHLNEVKSLIEPILRIN*	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g00168	364	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	162	297	IPR029047	-
	Phac8g00168	364	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	199	293	IPR029047	-
	Phac8g00168	364	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	154	198	IPR029047	-
	Phac8g00168	364	Gene3D	-	294	363	IPR029048	-
	Phac8g00168	364	SUPERFAMILY	Actin-like ATPase domain	15	154	IPR043129	-
	Phac8g00168	364	PRINTS	70kDa heat shock protein signature	225	241	-	-
	Phac8g00168	364	PRINTS	70kDa heat shock protein signature	163	182	-	-
	Phac8g00168	364	PRINTS	70kDa heat shock protein signature	137	157	-	-
	Phac8g00168	364	PRINTS	70kDa heat shock protein signature	105	121	-	-
	Phac8g00168	364	SUPERFAMILY	Heat shock protein 70kD (HSP70), C-terminal subdomain	291	361	IPR029048	-
	Phac8g00168	364	Gene3D	Actin; Chain A, domain 4	16	86	-	-
	Phac8g00168	364	Coils	Coil	324	344	-	-
	Phac8g00168	364	Gene3D	-	135	152	-	-
	Phac8g00168	364	PANTHER	HEAT SHOCK PROTEIN 70KDA	15	327	IPR013126	GO:0005524\|GO:0140662
	Phac8g00168	364	FunFam	Heat shock 70 kDa	8	86	-	-
	Phac8g00168	364	Pfam	Hsp70 protein	16	358	IPR013126	GO:0005524\|GO:0140662
	Phac8g00168	364	Gene3D	-	87	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g00168	Phac-Chr8	1084720	1085868	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g00168	15	361	Calmodulin-binding Proteins	AT3G12580	56.403	3.88e-138	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g00168	K03283		-	gmx:102667578	415.616